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The map label for this gene is 52140798

Identifier: 52140798

GI number: 52140798

Start: 4554568

End: 4555113

Strand: Reverse

Name: 52140798

Synonym: BCZK4453

Alternate gene names: NA

Gene position: 4555113-4554568 (Counterclockwise)

Preceding gene: 52140799

Following gene: 52140800

Centisome position: 85.93

GC content: 36.63

Gene sequence:

>546_bases
ATGGAGCCACATTATTTTGTCGCGATTACGTTACCAAATCATATAAAAGAAGTGCTGTCTAACTATAGAGAGGAAATGCA
GGAGGAATTACCATTCCGTTCGTGGGTACATAAAGAAGACTATCATATTACCCTTTCATTTTTAGGTAGTGCGACAGAGG
AACAATTAGAAGGAATAAAGAATGGATTACAAACACTTATAGAAACGAAAGAACTATCGTTCACATTACAAGGGTTTTCA
ACGTTTGGTATGGAAGACAGACCGCGTATTTTTTGGGCAAAGGTAAGCGAGAATCAAGATTTGTTTCCATTACAAAAGCA
AGTACACGCTATTTGTGAAGGGAATGGATTTTCTTTAGAAACGCGCCCGTATCATCCGCATATTACTGTTGCTCGTAAAT
GGGTAGGAGAAAAAAGGTTTGTTTTAGAACATATAAAAGAAGTGCCTGAAATATCATTTCAAGCGGATACGATTACTTTA
TACGAATCTCACGTGAAAGAAGCGCCGAAGTATAAAGCGATTGCTGAAATAAAATTACAAAAATAG

Upstream 100 bases:

>100_bases
ATATATAAATAATGACCGCTCTCTATTTTGGAGGGCGGCTTCTTTTTACCTGAATGAGATAAGAAAGAAAAGCAACAATA
GAAAGAAGGAGAAGATGTAC

Downstream 100 bases:

>100_bases
AATGTATGAAAACGTTTTTTATACAGGTGAATATACTATAAAGAACAATGTGTTACTGTATAGGGCTTCGCTGATAAGAA
AAGCCTTATCATTTGCAGCT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIKNGLQTLIETKELSFTLQGFS
TFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTITL
YESHVKEAPKYKAIAEIKLQK

Sequences:

>Translated_181_residues
MEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIKNGLQTLIETKELSFTLQGFS
TFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTITL
YESHVKEAPKYKAIAEIKLQK
>Mature_181_residues
MEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIKNGLQTLIETKELSFTLQGFS
TFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTITL
YESHVKEAPKYKAIAEIKLQK

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21173; Mature: 21173

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIK
CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCHHHHHHHH
NGLQTLIETKELSFTLQGFSTFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLE
HHHHHHHHHHHHEEEEECCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEE
TRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTITLYESHVKEAPKYKAIAEIKLQ
CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEHEEHHHHHCCCCCCEEEEEEEC
K
C
>Mature Secondary Structure
MEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIK
CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCHHHHHHHH
NGLQTLIETKELSFTLQGFSTFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLE
HHHHHHHHHHHHEEEEECCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEE
TRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTITLYESHVKEAPKYKAIAEIKLQ
CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEHEEHHHHHCCCCCCEEEEEEEC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8190087 [H]