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The map label for this gene is ytbD [H]

Identifier: 52140465

GI number: 52140465

Start: 4887400

End: 4888614

Strand: Reverse

Name: ytbD [H]

Synonym: BCZK4793

Alternate gene names: 52140465

Gene position: 4888614-4887400 (Counterclockwise)

Preceding gene: 52140461

Following gene: 52140466

Centisome position: 92.22

GC content: 37.53

Gene sequence:

>1215_bases
TTGAGTTCATATACAGTACCATCTTCGGAAGTTCAGACGAATCGAAGAAGTATGTTTGCTTTATTAGCACTAGCAATTAG
TGCATTTGGAATTGGGACGACCGAGTTTATTAGTGTCGGTTTATTACCATCTATTTCAAAAGATTTAAATGTTTCGGTTA
CAACAGCTGGTTTAACTGTTTCCCTATATGCGTTAGGGGCGGCAGTAGGAGCTCCTGTTTTAACAGCGTTAACGGCTAGT
ATGTCGAGAAAGACATTATTAATGTGGATTATGGTTATTTTCATTATTGGTAATGGGATCGCGGCAGTAGCAACAAGTTT
CACTATATTAATTATCGCAAGGATTGTATCTGCTTTTGCACATGGTGTGTTTATGTCGATAGGATCTACAATTGCAGCCG
CAATCGTCCCAGAGAATAAACGTGCTAGCGCCATTGCGATTATGTTTACTGGATTAACAGTTGCGACTATTACAGGTGTG
CCAATTGGAACGTTTATCGGTCAACAATTTGGCTGGAGAGCGTCATTTATGGCGATTGTCGTAATTGGAATTATTGCTTT
TATCGCAAACAGCATACTAGTCCCATCTAATTTAAAAAATGGTGTACCTGTATCGTTTCGTGATCAATTTAAATTAATTA
AAAATGGAAGACTATTACTTGTTTTCATTATTACTGCACTTGGATATGGCGGTACATTCGTAACATTTACGTATTTATCA
CCTCTATTACAAGAGGTAACAGGATTTGAAGCAAGTACCGTTACCATCATTTTATTAGTGTATGGAATTGCCATTGCGAT
AGGGAATATGGTCGGCGGAAAATTATCGAATCATAATCCGATTCGAGCGCTATTTTACATGTTCTTTATTCAAGCGATTA
TATTATTTGTTTTAACATTTACAGCGCCATTTAAAGTAGCTGGATTAATCACAATTATTTTCATGGGACTATTCGCATTT
ATGAATGTTCCGGGGCTACAAGTATATGTAGTTATATTGGCAGAGCGCTTTGTTCCGAGTGCGGTTGATGTTGCTTCAGC
AATTAATATTGCCGCATTTAACGGAGGAATCGCTTTAGGTTCTTATATAGGTGGCCTTGTAACGAATTCGTTAGGATTAA
TCCATACTGCTTGGGTAGGTGGTCTTATGGTAGTAGCCGCTGTTATTTTAACAGCGTGGAGTATGGCATTAGAAAAAAGA
GATCAAGTAAAATAA

Upstream 100 bases:

>100_bases
ATAATAGCATTTGTAGAGATTAAATATATTTTTTAGAAGATAAAAGGGCCTTTTTATCGCACTATTATGATTGGATTTCT
TGTAATAAGGAGGAATTCAA

Downstream 100 bases:

>100_bases
AAGGAGAGAAAATAAAATGAAAAACTTACAAAGTAAAGCAGTATTAAATAACGGTGTGGAAATGCCTTGGTTCGGTTTAG
GTGTATTTAAAGTAGAAGAA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPVLTALTAS
MSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFAHGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGV
PIGTFIGQQFGWRASFMAIVVIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITIIFMGLFAF
MNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMALEKR
DQVK

Sequences:

>Translated_404_residues
MSSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPVLTALTAS
MSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFAHGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGV
PIGTFIGQQFGWRASFMAIVVIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITIIFMGLFAF
MNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMALEKR
DQVK
>Mature_403_residues
SSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPVLTALTASM
SRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFAHGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGVP
IGTFIGQQFGWRASFMAIVVIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLSP
LLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITIIFMGLFAFM
NVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMALEKRD
QVK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=335, Percent_Identity=37.3134328358209, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1786595, Length=359, Percent_Identity=32.033426183844, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1787808, Length=398, Percent_Identity=29.8994974874372, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI145693198, Length=366, Percent_Identity=26.2295081967213, Blast_Score=107, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42553; Mature: 42422

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCHHH
SLYALGAAVGAPVLTALTASMSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGVPIGTFIGQQFGWRASFMAIV
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHCCHHHHHHHHH
VIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFFIQAIILFVLTF
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPFKVAGLITIIFMGLFAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCHHHH
SYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMALEKRDQVK
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCHHH
SLYALGAAVGAPVLTALTASMSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGVPIGTFIGQQFGWRASFMAIV
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHCCHHHHHHHHH
VIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFFIQAIILFVLTF
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPFKVAGLITIIFMGLFAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCHHHH
SYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMALEKRDQVK
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]