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The map label for this gene is cydB [H]

Identifier: 52140343

GI number: 52140343

Start: 5007976

End: 5009001

Strand: Direct

Name: cydB [H]

Synonym: BCZK4918

Alternate gene names: 52140343

Gene position: 5007976-5009001 (Clockwise)

Preceding gene: 52140342

Following gene: 52140341

Centisome position: 94.47

GC content: 39.67

Gene sequence:

>1026_bases
GTGCATGAGGAAAGTATTGCAATCATCATCTTATGGGCTCTTATTTTCGTATACAGTATATTAGGGTCCATCGATTTTGG
AGCAGGTTTTTGGGGCATGGTATACGCAAAACATCCAACGCTCGCTGCCAAGCTTGCCAACCGATACTTATCACCGACTT
GGGAAGTAACAAATACATTTCTCGTCTTTGTCGTTGTCGCTTTTCTCGGTTTCTTTCCGAAAGCCGCTTTCACCCTAGCA
ACGGTGATGTTCGTACCCGTTATGTTAATTTTAGTACTCGTGGCAATTCGCAGTACATTTATGGTATTTGCTTATTCTCT
GCCGAAGTACCAACACCTTCTTCGTATCATTTCAGGTATTACAGGGCTCTTAATTCCAGCTCTATTAATTACCGTTTTAC
CCGTTACAGAAGGCGCCTATATTACAATGTCTGAAGGAAAAGAAGTACTCCTGTATGGAAAACTTCTTTCTAGTCCTGTT
ATTTATTGTTATATGCTCTTCGGACTAACTTCGGAACTCTTTCTATCTTCTCTCTTTCTTGCTGATTTTGCGAGAGAACA
AGGTTCAGAAGATGCATATAAAATTTATAGAAGAAACGCGATCATCCTTGGTCCTGCAACGCTCGTTACGGCGATTATCG
CCCTCGTTGTAATGGATCCAGAAACACACTGGCTTATGCAAGGACTAATAAAACAATTCGCGTGGTTTACAGTTTCTATC
GTTTTGTTCGTTATCGGGTACTCTTCCCTTTGGTGGACAAACAAGAAGTATAGCACACTAGGATATCCTCGTATTGCTGT
TTTAGCTGTCGTCGCTCAATATGCATTTGCAAGTTATGCTTACGGCGTTGCGCATTTACCGTATATTATTTATCCTGATG
TAACTGTATTTACAAGCTTTACAACGGTCGAAACATTCTATGCATTGCTTATTTTATATGCAATTGGGATCGCAATTTTA
TTACCAGGATTTATTTTCTTCTGGAACTTATTCTTGAAGGATCGAACTTTTTTGAAGGGAAAATAA

Upstream 100 bases:

>100_bases
TTATATATTGGACTCGGTATTTTAACAGTCTTTGTGCTACGGACATTCTTTAAGAAACATCCGCTTACAAATGATTTACA
TCACGAAGGAGGCGATTCTC

Downstream 100 bases:

>100_bases
TATTGTGGGGGGCCTGTTCCGAAAGGTATTTCGAGATGGGCTCCCTTGTCATGTTTTGTCGGTAAATCGATATATTTTAA
AAATCGCTGATATATTTTGA

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MHEESIAIIILWALIFVYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTFLVFVVVAFLGFFPKAAFTLA
TVMFVPVMLILVLVAIRSTFMVFAYSLPKYQHLLRIISGITGLLIPALLITVLPVTEGAYITMSEGKEVLLYGKLLSSPV
IYCYMLFGLTSELFLSSLFLADFAREQGSEDAYKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFAWFTVSI
VLFVIGYSSLWWTNKKYSTLGYPRIAVLAVVAQYAFASYAYGVAHLPYIIYPDVTVFTSFTTVETFYALLILYAIGIAIL
LPGFIFFWNLFLKDRTFLKGK

Sequences:

>Translated_341_residues
MHEESIAIIILWALIFVYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTFLVFVVVAFLGFFPKAAFTLA
TVMFVPVMLILVLVAIRSTFMVFAYSLPKYQHLLRIISGITGLLIPALLITVLPVTEGAYITMSEGKEVLLYGKLLSSPV
IYCYMLFGLTSELFLSSLFLADFAREQGSEDAYKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFAWFTVSI
VLFVIGYSSLWWTNKKYSTLGYPRIAVLAVVAQYAFASYAYGVAHLPYIIYPDVTVFTSFTTVETFYALLILYAIGIAIL
LPGFIFFWNLFLKDRTFLKGK
>Mature_341_residues
MHEESIAIIILWALIFVYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTFLVFVVVAFLGFFPKAAFTLA
TVMFVPVMLILVLVAIRSTFMVFAYSLPKYQHLLRIISGITGLLIPALLITVLPVTEGAYITMSEGKEVLLYGKLLSSPV
IYCYMLFGLTSELFLSSLFLADFAREQGSEDAYKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFAWFTVSI
VLFVIGYSSLWWTNKKYSTLGYPRIAVLAVVAQYAFASYAYGVAHLPYIIYPDVTVFTSFTTVETFYALLILYAIGIAIL
LPGFIFFWNLFLKDRTFLKGK

Specific function: Unknown

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38304; Mature: 38304

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEESIAIIILWALIFVYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
LVFVVVAFLGFFPKAAFTLATVMFVPVMLILVLVAIRSTFMVFAYSLPKYQHLLRIISGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TGLLIPALLITVLPVTEGAYITMSEGKEVLLYGKLLSSPVIYCYMLFGLTSELFLSSLFL
HHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADFAREQGSEDAYKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFAWFTVSI
HHHHHHCCCHHHHHHHHCCEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
VLFVIGYSSLWWTNKKYSTLGYPRIAVLAVVAQYAFASYAYGVAHLPYIIYPDVTVFTSF
HHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHH
TTVETFYALLILYAIGIAILLPGFIFFWNLFLKDRTFLKGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure
MHEESIAIIILWALIFVYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
LVFVVVAFLGFFPKAAFTLATVMFVPVMLILVLVAIRSTFMVFAYSLPKYQHLLRIISGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TGLLIPALLITVLPVTEGAYITMSEGKEVLLYGKLLSSPVIYCYMLFGLTSELFLSSLFL
HHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADFAREQGSEDAYKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFAWFTVSI
HHHHHHCCCHHHHHHHHCCEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
VLFVIGYSSLWWTNKKYSTLGYPRIAVLAVVAQYAFASYAYGVAHLPYIIYPDVTVFTSF
HHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHH
TTVETFYALLILYAIGIAILLPGFIFFWNLFLKDRTFLKGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]