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The map label for this gene is cydA [H]

Identifier: 52140342

GI number: 52140342

Start: 5006628

End: 5007983

Strand: Direct

Name: cydA [H]

Synonym: BCZK4917

Alternate gene names: 52140342

Gene position: 5006628-5007983 (Clockwise)

Preceding gene: 52140346

Following gene: 52140343

Centisome position: 94.45

GC content: 41.96

Gene sequence:

>1356_bases
ATGGATACGGTAACATTAGCAAGAGCATTTTTCGGTTCTTCACTAGCATTCCACATTATCTTCGCAACACTTGGTGTCGG
ACTTTCATTGATGATTTTTATAAGTGAAATACTCTATCACTGGAAGAAAGATTCTGACTACGCCATTATGGCGAAAAGGT
GGACAAAGGCTTTTGCTATCCTTCTCGGTGTAGCAATTCCAACTGGAACAATCGTTGGTGTGCAAATCTCACTTCTTTGG
CCTGGTTTTGCCAAAATTGTTGGGCAGGTTATTTCTGTGCCCTTTCAAATTGAGATTTTCGCCTTCTTTTTAGAGGCTTT
GTTCATGTCCATTTATGTATATGCAGCTGACAAACTACCTCCATTCATGAGATTAATCTCGCTATTCTTTGTCATGATTG
GTGCCACAGCATCCGCCGTGCTTATTACATCAGCAAATACATGGATGAATACACCTGCGGGCTTCTCAATGGGGCCAGAT
GGATCAGTTTTTAACGTTGATCCGTGGAAAGCTTTCTTTAATCCGAGTTTTGGCACAAGCGCATTCCACGTTGTGATTAC
AGCCTACGCAACTGGAGCTGCCGTCATTGCCTCTATCGCTGGATTTAAATTATTAAAGAAAAATTTAAGTGAACGTGAAG
TGGCGTATCATAAAAAAGGGCTACTATTAGGACTCGTCGTAACATTTATTACAGGCGCTACGATGTGGCTTTCAGGACAT
GAATCGGCAATTGCTTTACATAAGCATTCCCCTGAAAAACTGGCATCTGCTGAAGCTTTATTTGAAACGACATCACATGC
ACCGTTATCCATTGGCGGCGTTGTAGACCCTAACACACTTGAACTAAACTATGCACTAGAAATTCCGAACATGCTTAGCC
TACTAGTGGGACTAGACCCTAACACCGTCGTAAAAGGTCTAAATGAATTTCCACAAGAAACATGGCCACCATTTTACACA
CATACACTATTCAATTTAATGGTTGGCACTGCTGCCTTTACCTTTGCAGTTGCAGCAATTGCCCTCTTATATTGGTACTT
TGTTTACCGAAAAAAAGGAACAGAGCTACCGAAGTGGCTTCTTTGGGGAGCTGCCGCATGTGGACCAGTTATGATGCTCG
GCATTGAATTCGGGTGGATTTTCAGCTGTAGCGGTCGTCAACCTTGGACCATTTACGGTATGCAACGTACAGTCGATGCT
TCTACACGTGCTGATTTTGTCGGTCCTTTATTTATTCTATTCATCATTTTATATATTGGACTCGGTATTTTAACAGTCTT
TGTGCTACGGACATTCTTTAAGAAACATCCGCTTACAAATGATTTACATCACGAAGGAGGCGATTCTCGTGCATGA

Upstream 100 bases:

>100_bases
ATATTCACTTTTTAAATACATATATATTTTTGGTAGTTTTTTTGAATAAATCTTCCAATTCAATCAGAAAATAATGGCAA
AAAAGAAGAGGAGTTTACAT

Downstream 100 bases:

>100_bases
GGAAAGTATTGCAATCATCATCTTATGGGCTCTTATTTTCGTATACAGTATATTAGGGTCCATCGATTTTGGAGCAGGTT
TTTGGGGCATGGTATACGCA

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAILLGVAIPTGTIVGVQISLLW
PGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNTPAGFSMGPD
GSVFNVDPWKAFFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFITGATMWLSGH
ESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDPNTVVKGLNEFPQETWPPFYT
HTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGTELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTIYGMQRTVDA
STRADFVGPLFILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA

Sequences:

>Translated_451_residues
MDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAILLGVAIPTGTIVGVQISLLW
PGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNTPAGFSMGPD
GSVFNVDPWKAFFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFITGATMWLSGH
ESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDPNTVVKGLNEFPQETWPPFYT
HTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGTELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTIYGMQRTVDA
STRADFVGPLFILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA
>Mature_451_residues
MDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAILLGVAIPTGTIVGVQISLLW
PGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNTPAGFSMGPD
GSVFNVDPWKAFFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFITGATMWLSGH
ESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDPNTVVKGLNEFPQETWPPFYT
HTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGTELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTIYGMQRTVDA
STRADFVGPLFILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA

Specific function: Probable cytochrome [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=319, Percent_Identity=28.5266457680251, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081779, Length=319, Percent_Identity=26.9592476489028, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49546; Mature: 49546

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAI
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLGVAIPTGTIVGVQISLLWPGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLP
HHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PFMRLISLFFVMIGATASAVLITSANTWMNTPAGFSMGPDGSVFNVDPWKAFFNPSFGTS
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCC
AFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFITGATMWLSGH
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCEEECCC
ESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDP
CCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHCCCH
NTVVKGLNEFPQETWPPFYTHTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGTELPKWL
HHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LWGAAACGPVMMLGIEFGWIFSCSGRQPWTIYGMQRTVDASTRADFVGPLFILFIILYIG
HHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHHHHH
LGILTVFVLRTFFKKHPLTNDLHHEGGDSRA
HHHHHHHHHHHHHHHCCCCCCHHCCCCCCCC
>Mature Secondary Structure
MDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAI
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLGVAIPTGTIVGVQISLLWPGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLP
HHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PFMRLISLFFVMIGATASAVLITSANTWMNTPAGFSMGPDGSVFNVDPWKAFFNPSFGTS
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCC
AFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFITGATMWLSGH
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCEEECCC
ESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDP
CCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHCCCH
NTVVKGLNEFPQETWPPFYTHTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGTELPKWL
HHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LWGAAACGPVMMLGIEFGWIFSCSGRQPWTIYGMQRTVDASTRADFVGPLFILFIILYIG
HHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHHHHH
LGILTVFVLRTFFKKHPLTNDLHHEGGDSRA
HHHHHHHHHHHHHHHCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]