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The map label for this gene is ymfF [H]

Identifier: 51894331

GI number: 51894331

Start: 3406044

End: 3407327

Strand: Reverse

Name: ymfF [H]

Synonym: STH3196

Alternate gene names: 51894331

Gene position: 3407327-3406044 (Counterclockwise)

Preceding gene: 51894332

Following gene: 51894330

Centisome position: 95.55

GC content: 68.54

Gene sequence:

>1284_bases
TTGGCGGATCACTTCACCCGCTTCCCCCTGCACGAGGGCGTCAACCTCTACGTGCAGCCGACGCGCAAGTTCAAGACGAC
GACGGTCTATATCTACTTCCACATGCCGCTGGAACCTGTGACGGTGACCTACAACGCGCTGCTGCCGATGGTGCTGGCCC
GGGCCTCGGCCGACTTTCCCACCACTGCGGCGCTGTCCCGACATCTGGATGAGCTGTATGGCGCGTCCTTCAGCGTCGAC
GTCGCCCGGCGCGGCGAGGTGCAGTCCATCGTCTTCCGCCTGGAGGTGGCCGGAGACCACCACATCCCGGGCGAGCGCGG
GCTCCTCCTGCGGGGCCTGGACGTGCTCGCCAGCGTCATCACCCGCCCGCTGCTGGTCGGCGACGGCTTCCGGCCCGACT
ACGTCGAGCAGGAGCGGAACAACCTCCGGCAGATGATCGAGGGGCTCATCAACGACAAGCGGCGCTATGCGATGGTCCGC
TGCACCGCCGAGATGTGCGCGGGTGAGCCCTTCGCCCTGCACCGGCTGGGCCGGGTGGAGGATCTGGAGGGCGCCACCCC
GCAGAGCCTGCTGGCGCACCACCGACGGGTGCTGACGGAGGCCCCGGTGGACATCTTCATCCTCGGCGACGTCGACCCCG
AACAGGTGGCGCAGGAGGTCCCCCGGCGGCTGCCGATTCCGGCCGGGGAGCGCCGGTTCCCCGACACCCTGGTCAAGCGC
CGGCCGGACGGGCCCGTGCGCGCGGTGGTCGACCGGATGGACGTCAACCAGGGCGTGGTGGTCATTGGCTTCCGCACCGG
GATCACGCTCCGGGACGAGCTGTACTTCCCGATGCTGGTGGCCAACGGCGTGCTCGGGGGATTCTCCCACTCCAAGCTCT
TCCAGGAGGTGCGGGAGAAGCATTCGCTGGCCTACTTCGCCTACTCGGCCATCGAGACGGTGAAGGGCGTGGGATACATG
TACGCCGGCGTGGAGTTCGCCGACGCGGAGAAGTGCCGGGCGATCATGCTGGAGCAACTGAAGGCGCTGCAGGAGGGGGC
GCTGACCGAGGCCGAGCTGGAGATGACGAAGGCCACCCTGGTGAACGATATGCTGAGCGCGGCCGACAGCCCCGGGGCGA
TGGCGGAGCTGGCGGTGGACCAGGTCTTCTCGGGCCGCGACCTCTCCATCGACGAGCGGGTGACGCGCTACCGACAGGTC
ACCCGGGAGCAGGTGGTCGAGGCCGCCCGCCACTTCACGCCCGACACGGTCTACCTGCTCACCAGGAAGGAAGGGGGAGC
GTAA

Upstream 100 bases:

>100_bases
TCTGCCCCTCACCGACGCGGTGCAGCTGTGCCTTAACTGGGACCGCCAGGAAGCGCCGCCCCGCGCCGGGGCAGACTAAG
GCCAGGAAGGAGGGTTCCCG

Downstream 100 bases:

>100_bases
TCGGTGGAGCGGCACTTTGACCCCATCCTGCGTGACGAACTGTACACCGAGCGACTGGAGAACGGCCTGACGGTGGCGGT
GCTGGTCAAGCCCGGCTTCC

Product: putative peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MADHFTRFPLHEGVNLYVQPTRKFKTTTVYIYFHMPLEPVTVTYNALLPMVLARASADFPTTAALSRHLDELYGASFSVD
VARRGEVQSIVFRLEVAGDHHIPGERGLLLRGLDVLASVITRPLLVGDGFRPDYVEQERNNLRQMIEGLINDKRRYAMVR
CTAEMCAGEPFALHRLGRVEDLEGATPQSLLAHHRRVLTEAPVDIFILGDVDPEQVAQEVPRRLPIPAGERRFPDTLVKR
RPDGPVRAVVDRMDVNQGVVVIGFRTGITLRDELYFPMLVANGVLGGFSHSKLFQEVREKHSLAYFAYSAIETVKGVGYM
YAGVEFADAEKCRAIMLEQLKALQEGALTEAELEMTKATLVNDMLSAADSPGAMAELAVDQVFSGRDLSIDERVTRYRQV
TREQVVEAARHFTPDTVYLLTRKEGGA

Sequences:

>Translated_427_residues
MADHFTRFPLHEGVNLYVQPTRKFKTTTVYIYFHMPLEPVTVTYNALLPMVLARASADFPTTAALSRHLDELYGASFSVD
VARRGEVQSIVFRLEVAGDHHIPGERGLLLRGLDVLASVITRPLLVGDGFRPDYVEQERNNLRQMIEGLINDKRRYAMVR
CTAEMCAGEPFALHRLGRVEDLEGATPQSLLAHHRRVLTEAPVDIFILGDVDPEQVAQEVPRRLPIPAGERRFPDTLVKR
RPDGPVRAVVDRMDVNQGVVVIGFRTGITLRDELYFPMLVANGVLGGFSHSKLFQEVREKHSLAYFAYSAIETVKGVGYM
YAGVEFADAEKCRAIMLEQLKALQEGALTEAELEMTKATLVNDMLSAADSPGAMAELAVDQVFSGRDLSIDERVTRYRQV
TREQVVEAARHFTPDTVYLLTRKEGGA
>Mature_426_residues
ADHFTRFPLHEGVNLYVQPTRKFKTTTVYIYFHMPLEPVTVTYNALLPMVLARASADFPTTAALSRHLDELYGASFSVDV
ARRGEVQSIVFRLEVAGDHHIPGERGLLLRGLDVLASVITRPLLVGDGFRPDYVEQERNNLRQMIEGLINDKRRYAMVRC
TAEMCAGEPFALHRLGRVEDLEGATPQSLLAHHRRVLTEAPVDIFILGDVDPEQVAQEVPRRLPIPAGERRFPDTLVKRR
PDGPVRAVVDRMDVNQGVVVIGFRTGITLRDELYFPMLVANGVLGGFSHSKLFQEVREKHSLAYFAYSAIETVKGVGYMY
AGVEFADAEKCRAIMLEQLKALQEGALTEAELEMTKATLVNDMLSAADSPGAMAELAVDQVFSGRDLSIDERVTRYRQVT
REQVVEAARHFTPDTVYLLTRKEGGA

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR007863 [H]

Pfam domain/function: PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 47740; Mature: 47609

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADHFTRFPLHEGVNLYVQPTRKFKTTTVYIYFHMPLEPVTVTYNALLPMVLARASADFP
CCCCCCCCCHHCCCEEEEECCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCCC
TTAALSRHLDELYGASFSVDVARRGEVQSIVFRLEVAGDHHIPGERGLLLRGLDVLASVI
HHHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
TRPLLVGDGFRPDYVEQERNNLRQMIEGLINDKRRYAMVRCTAEMCAGEPFALHRLGRVE
HCHHEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHEEHEEEEHHHHCCCCHHHHHCCCCC
DLEGATPQSLLAHHRRVLTEAPVDIFILGDVDPEQVAQEVPRRLPIPAGERRFPDTLVKR
CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHC
RPDGPVRAVVDRMDVNQGVVVIGFRTGITLRDELYFPMLVANGVLGGFSHSKLFQEVREK
CCCCHHHHHHHHHCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
HSLAYFAYSAIETVKGVGYMYAGVEFADAEKCRAIMLEQLKALQEGALTEAELEMTKATL
HHHHHHHHHHHHHHHHCCHHEECCEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VNDMLSAADSPGAMAELAVDQVFSGRDLSIDERVTRYRQVTREQVVEAARHFTPDTVYLL
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
TRKEGGA
EECCCCC
>Mature Secondary Structure 
ADHFTRFPLHEGVNLYVQPTRKFKTTTVYIYFHMPLEPVTVTYNALLPMVLARASADFP
CCCCCCCCHHCCCEEEEECCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCCC
TTAALSRHLDELYGASFSVDVARRGEVQSIVFRLEVAGDHHIPGERGLLLRGLDVLASVI
HHHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
TRPLLVGDGFRPDYVEQERNNLRQMIEGLINDKRRYAMVRCTAEMCAGEPFALHRLGRVE
HCHHEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHEEHEEEEHHHHCCCCHHHHHCCCCC
DLEGATPQSLLAHHRRVLTEAPVDIFILGDVDPEQVAQEVPRRLPIPAGERRFPDTLVKR
CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHC
RPDGPVRAVVDRMDVNQGVVVIGFRTGITLRDELYFPMLVANGVLGGFSHSKLFQEVREK
CCCCHHHHHHHHHCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
HSLAYFAYSAIETVKGVGYMYAGVEFADAEKCRAIMLEQLKALQEGALTEAELEMTKATL
HHHHHHHHHHHHHHHHCCHHEECCEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VNDMLSAADSPGAMAELAVDQVFSGRDLSIDERVTRYRQVTREQVVEAARHFTPDTVYLL
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
TRKEGGA
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]