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The map label for this gene is ydgM [C]

Identifier: 51894277

GI number: 51894277

Start: 3343569

End: 3344018

Strand: Reverse

Name: ydgM [C]

Synonym: STH3142

Alternate gene names: 51894277

Gene position: 3344018-3343569 (Counterclockwise)

Preceding gene: 51894278

Following gene: 51894276

Centisome position: 93.77

GC content: 67.11

Gene sequence:

>450_bases
GTGCCGCACTATATCGACGAGAAGTGCATCGGCTGCACCGCCTGCGTTTCCGTCTGCCCGACCGAGGCGATCAGCGGCGA
GCGGAAGCAGCTGCACTACATCGACCCGAAGCTCTGCATCGACTGCGACGCCTGCGTGCGCAGCTGCCCGGTGCTGGCGA
TCGCGGACGAGTTCGGCGTCTACAAGCCTCGCATCCCCAAGCGCTCGGACTGGCCGAAGCCGGTCATCGACCCCGTGTCC
TGCTCCGGTTGCGACTTCTGCGTGGACATCTGCCCGTTCGACTGCCTGGAGCTGGCTGGGGACGGCCCGTTCTTCGGGAC
GGCCGTGCTGGTGAGGCCCAACGCGTGCGTCGGGTGCAAGGAGTGCGAGGAGGTCTGCGCCAAGGGCGCGATCATCGTCC
TGGCGCCGGACGAGCAGCACCCGATCGCCGTCGCAGAGGGAAGAATGTAG

Upstream 100 bases:

>100_bases
GCCCGGCCCTGAGCAGGCCGCTGCGCTACCGGATCACGCGCCGGCTGCGCGAGGGGCGCCTGCCCGAGACCGGCTAGTGG
CCCCCAAAGGAGGGAGAACC

Downstream 100 bases:

>100_bases
AATATGGACGTTTTGGGGGAGCCCTCGGTGTCGAGGGCTCCCGTTGCCATTGTCGACCGTGCGCAGGTAAGGTTCGACGT
CGGGTCGAATCCCGTTTACA

Product: ferredoxin

Products: NA

Alternate protein names: Electron Transport Complex RnfABCDGE Type B Subunit

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MPHYIDEKCIGCTACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAIADEFGVYKPRIPKRSDWPKPVIDPVS
CSGCDFCVDICPFDCLELAGDGPFFGTAVLVRPNACVGCKECEEVCAKGAIIVLAPDEQHPIAVAEGRM

Sequences:

>Translated_149_residues
MPHYIDEKCIGCTACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAIADEFGVYKPRIPKRSDWPKPVIDPVS
CSGCDFCVDICPFDCLELAGDGPFFGTAVLVRPNACVGCKECEEVCAKGAIIVLAPDEQHPIAVAEGRM
>Mature_148_residues
PHYIDEKCIGCTACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAIADEFGVYKPRIPKRSDWPKPVIDPVSC
SGCDFCVDICPFDCLELAGDGPFFGTAVLVRPNACVGCKECEEVCAKGAIIVLAPDEQHPIAVAEGRM

Specific function: Unknown

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16080; Mature: 15949

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

11.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
12.8 %Cys+Met (Translated Protein)
11.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
12.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHYIDEKCIGCTACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAIADEFGV
CCCCCCCHHHHHHHHHHHCCCHHCCCCCCEEEECCCCEEEEHHHHHHHCCEEEEECCCCC
YKPRIPKRSDWPKPVIDPVSCSGCDFCVDICPFDCLELAGDGPFFGTAVLVRPNACVGCK
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCCHH
ECEEVCAKGAIIVLAPDEQHPIAVAEGRM
HHHHHHHCCCEEEEECCCCCCEEECCCCC
>Mature Secondary Structure 
PHYIDEKCIGCTACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAIADEFGV
CCCCCCHHHHHHHHHHHCCCHHCCCCCCEEEECCCCEEEEHHHHHHHCCEEEEECCCCC
YKPRIPKRSDWPKPVIDPVSCSGCDFCVDICPFDCLELAGDGPFFGTAVLVRPNACVGCK
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCCHH
ECEEVCAKGAIIVLAPDEQHPIAVAEGRM
HHHHHHHCCCEEEEECCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA