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The map label for this gene is ydeB [H]

Identifier: 51894260

GI number: 51894260

Start: 3324932

End: 3325411

Strand: Reverse

Name: ydeB [H]

Synonym: STH3125

Alternate gene names: 51894260

Gene position: 3325411-3324932 (Counterclockwise)

Preceding gene: 51894262

Following gene: 51894259

Centisome position: 93.25

GC content: 66.67

Gene sequence:

>480_bases
GTGTTCCAGGTGGGCGACAAGGTCGTGTACCCGATGCACGGCGCCGGCATCATCGAGGCCATCGAGGACCGGGAGGTGCT
GGGGGAGCGGAAGCGCTACTACGTCCTGCGGCTGCCGGTGGCCGACATGCAGGTGCTTGTGCCCTGCGACGGTCCGCAGA
GCACGGGGCTGCGCGCGGTGATGTCCGAGCAGGTCTTCCAGCAGGTGCTGGAGGTGCTGCGATCCCGGCCGACCCAGGCG
GAGAAGAACTGGAACCACCGCTACCGGATGAACATGGAGAAGATCCGCAGCGGCGACGTCCTCGCACTGGCCGAGGTCGT
GCGTACGCTGTCGCAGCGAGAGCGGGAGAAGGGGCTGTCCACGGGGGAACGCAAGATGCTGGACAGCGCGCGGCAGATCC
TCCTGTCCGAGATCGTGTTGATCCGAGGCCTGGAGCTGGAACAGGCAAGCTCGCTTCTGGACCGCGTTCTCGCCCAGTGA

Upstream 100 bases:

>100_bases
AATTAAACTTTTCTTGACAAAGGTCGTGCGTGTCTGGTAAGCTGAGCACGGGCGGAGGGTTTCGCTGCCGCGGGGCACGG
GAGCAGGTGGGGGTGATCCG

Downstream 100 bases:

>100_bases
GGCGGCGCCGGGTGTCCGGCGCCCCTCGCCTTTCGCCAACTGTTCGGGTCGGGGTGCGAACCTGCACCTTTTCTGGTTCG
TCTCATAAACAGGGGGGCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MFQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAVMSEQVFQQVLEVLRSRPTQA
EKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLSTGERKMLDSARQILLSEIVLIRGLELEQASSLLDRVLAQ

Sequences:

>Translated_159_residues
MFQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAVMSEQVFQQVLEVLRSRPTQA
EKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLSTGERKMLDSARQILLSEIVLIRGLELEQASSLLDRVLAQ
>Mature_159_residues
MFQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAVMSEQVFQQVLEVLRSRPTQA
EKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLSTGERKMLDSARQILLSEIVLIRGLELEQASSLLDRVLAQ

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18148; Mature: 18148

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAV
CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHH
MSEQVFQQVLEVLRSRPTQAEKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLS
HHHHHHHHHHHHHHCCCCCCHHCCCHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
TGERKMLDSARQILLSEIVLIRGLELEQASSLLDRVLAQ
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MFQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAV
CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHH
MSEQVFQQVLEVLRSRPTQAEKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLS
HHHHHHHHHHHHHHCCCCCCHHCCCHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
TGERKMLDSARQILLSEIVLIRGLELEQASSLLDRVLAQ
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]