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The map label for this gene is ydcI [H]

Identifier: 51894064

GI number: 51894064

Start: 3155485

End: 3157779

Strand: Reverse

Name: ydcI [H]

Synonym: STH2928

Alternate gene names: 51894064

Gene position: 3157779-3155485 (Counterclockwise)

Preceding gene: 51894065

Following gene: 51894063

Centisome position: 88.55

GC content: 69.46

Gene sequence:

>2295_bases
TTGAGCCAGGATGCGATTCATGCCAGGCTGGCCCGGGAACTGGGCCTCACGGTGGGCCAGGTGGAGCGCTGCGTCGCGCT
GCTGGACGAGGGCAACACGGTGCCGTTCATCGCCCGCTACCGCAAGGAGGCCACGGGCGAGATGGACGAGACCCAGATCC
GCACCCTGCAGGAGCGGCTGGCCTACCTGCGGAACTTGGAGGCCGAGAAGGAGAAGGTGCTGCGGGTCATCGCCGAGCAG
GGCAAGCTGACCCCGGAGTTGGAGCGGGCCATCCGGGAGGCGGAGAAGCTGCAGGAGGTGGAGGACCTCTACCGGCCCTA
CCGGCCCAAGCGGCGCACCCGGGCCATGATCGCCCGGGAGCGGGGGCTGGAGCCGCTGGCGCAGCAGATGCTGGCGCAGG
CCGAGACAGCGGGTTCGCCTGAGCAGATCGCGGCCACCTATGTGAATCCGGAGCTCGGGGTGGCGTCGGCGGAGGAGGCC
CTGGCCGGCGCCCGGGATATCGTGGCGGAGATCGTGTCGGATGACGCGGCGGTGCGGAAGATGGCCCGTGAGCTGACCTT
CGCCCGCGGCGTGATCCGGTCGGCGGCCAGCGACAAGGGCGAGCCGGAGAAGGCCCGGGAGTTCGAGATGTACTTCGACT
TCCAGGAGCCGGTCCGCACGCTGCCTCCCCATCGCGTCCTGGCGCTGAACCGGGGCGAGCGGCTGGAGTGTCTGAAGGTG
ACGCTGGAGGCCCCGGAGGAGGAGATCATCGCCCGCATCGAGCGGCAGTACGTCACCGGCCGTTCCATCTGGGAGAACCA
CCTGCGGGAGGCGATCGCCGACGCGTACCGCCGGCTGATCGCGCCGTCTATCGAAACGGAGATTCGCAACGAGATCACCG
AGAAGGCCGAGGAGCACGCCATCCGGCTGTTCGCCATGAACCTGCGCAACCTGTTGCTGCAGCCGCCGATCAAGGGCATG
ACGGTGATGGGCATTGACCCCGGCTACCGCACCGGCTGCAAGGTGGCCGTGGTGGACGAGACCGGCCGGGTGCTGGAGAC
CGGCGTGATCTACGTGACCCTGGGCGAGCGGCAGCGGCAGCAGGGCGAGGAGGTCCTGGTGCGGCTGGTGGACAAGCACA
AGGTCGACCTGATCGCCATCGGCAACGGCACGGCCTCCCGGGAGACCGAGCAGGTGGTGGCGAGCATCATCCCCCGCTGC
AGCCACCCCACCGCCTACATGATCGTCTCCGAAGCGGGCGCCTCGGTGTACTCGGCCTCCAAGGTCGCCCAGGAGGAGTT
CCCCGACTTCGACGTGACCCTCCGCTCGGCGGTCTCCATCGCCCGGCGGGCGCAGGATCCCCTGGCCGAGCTGGTCAAGA
TCGATCCCAAGTCCATCGGCGTCGGCCTCTACCAGCACGACGTCAACCAGAGGCGGCTGGCCGAACAGCTCGGGGCCGTG
GTGGAGTCGGTGGTGAACGCCGTCGGCGTCGACCTGAACACGGCCTCGCCGTCGCTCCTGCAGTACGTGGCGGGCATCAA
GGCTTCCGTCGCCAGGGCCATCGTCGAGTACCGGGAGAAGCACGGCAAGTTCCGCAGCCGCCGGGAGCTGCTGAAGGTCT
CCGGCCTGGGGCCCAAGGCGTTTGAGCAGTGTGCGGGCTTCCTGCGGGTGACGGACGGCGTGGAGCCGCTGGACAACACC
GCCGTACACCCCGAGTCCTACGCGCTGGCCGAGGCGATCCTGAAGGCTGTGGGCGCCACCCGGGAGCAGCTGATCGGCAA
GGGGTCGGCCGGGCTGCGGGACGCCCTGAAGAAGCTCTCCCCGGAGCAGGTGGCCGCCGAGCTCGGGGCCGGCGTGCCCA
CGGTGCGGGACATCATCGAGGCCCTTTCGAAGCCGGGGCGCGACCCCCGGGACGAGCTGCCCCAGCCGATCTTCCGCACC
GACGTGCTGAAGCTGGAGGACCTGCAGGTGGGCATGGAGCTCATGGGCACCGTCCGCAACGTGGTCGACTTCGGCGCCTT
CGTGGACATCGGCGTCCACGAGGACGGCCTGGTCCACGTCTCCCAGCTCTCCCACAAGTACGTCAAGCACCCGTCCGAGG
TGGTGCAGGTGGGCGACGTGGTGCGGGTGAAGGTCATCGAAGTGGATCTGAAGCGGCAGCGCATCGGCCTCTCCATGAAG
CTGGGCGACCCGCCCGCGGCGGAGCGGCCCCGCGAGACCGGGCGGAGCCGTGAGGCCCGGCGGAAGCGGGCGGAGCGGCA
GCTGAGCCTGGAGGAGCAGGTGCAGATGCTGCGGGAGAAGTTCAAGCGGCTGTGA

Upstream 100 bases:

>100_bases
CGCCGATCATGACCGTGATGGTGTGGGACGGGGAGATGTGGCGAGACATGGAGCGGCTTCTCCTGCCCGGTGAGCCGCCC
GAGCGGGAAGGTGAAACGCG

Downstream 100 bases:

>100_bases
GGCCGAAGCCCAGCCGGGCATGGGGTGTCGCGCTTACGGGGGCGGGAGATTCCGCTCCCGTTTGTCTTCGCCCTGGTTCG
TCTGTCTGCACCGGCACATG

Product: ribosomal protein S1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 763

Protein sequence:

>764_residues
MSQDAIHARLARELGLTVGQVERCVALLDEGNTVPFIARYRKEATGEMDETQIRTLQERLAYLRNLEAEKEKVLRVIAEQ
GKLTPELERAIREAEKLQEVEDLYRPYRPKRRTRAMIARERGLEPLAQQMLAQAETAGSPEQIAATYVNPELGVASAEEA
LAGARDIVAEIVSDDAAVRKMARELTFARGVIRSAASDKGEPEKAREFEMYFDFQEPVRTLPPHRVLALNRGERLECLKV
TLEAPEEEIIARIERQYVTGRSIWENHLREAIADAYRRLIAPSIETEIRNEITEKAEEHAIRLFAMNLRNLLLQPPIKGM
TVMGIDPGYRTGCKVAVVDETGRVLETGVIYVTLGERQRQQGEEVLVRLVDKHKVDLIAIGNGTASRETEQVVASIIPRC
SHPTAYMIVSEAGASVYSASKVAQEEFPDFDVTLRSAVSIARRAQDPLAELVKIDPKSIGVGLYQHDVNQRRLAEQLGAV
VESVVNAVGVDLNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGLGPKAFEQCAGFLRVTDGVEPLDNT
AVHPESYALAEAILKAVGATREQLIGKGSAGLRDALKKLSPEQVAAELGAGVPTVRDIIEALSKPGRDPRDELPQPIFRT
DVLKLEDLQVGMELMGTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHPSEVVQVGDVVRVKVIEVDLKRQRIGLSMK
LGDPPAAERPRETGRSREARRKRAERQLSLEEQVQMLREKFKRL

Sequences:

>Translated_764_residues
MSQDAIHARLARELGLTVGQVERCVALLDEGNTVPFIARYRKEATGEMDETQIRTLQERLAYLRNLEAEKEKVLRVIAEQ
GKLTPELERAIREAEKLQEVEDLYRPYRPKRRTRAMIARERGLEPLAQQMLAQAETAGSPEQIAATYVNPELGVASAEEA
LAGARDIVAEIVSDDAAVRKMARELTFARGVIRSAASDKGEPEKAREFEMYFDFQEPVRTLPPHRVLALNRGERLECLKV
TLEAPEEEIIARIERQYVTGRSIWENHLREAIADAYRRLIAPSIETEIRNEITEKAEEHAIRLFAMNLRNLLLQPPIKGM
TVMGIDPGYRTGCKVAVVDETGRVLETGVIYVTLGERQRQQGEEVLVRLVDKHKVDLIAIGNGTASRETEQVVASIIPRC
SHPTAYMIVSEAGASVYSASKVAQEEFPDFDVTLRSAVSIARRAQDPLAELVKIDPKSIGVGLYQHDVNQRRLAEQLGAV
VESVVNAVGVDLNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGLGPKAFEQCAGFLRVTDGVEPLDNT
AVHPESYALAEAILKAVGATREQLIGKGSAGLRDALKKLSPEQVAAELGAGVPTVRDIIEALSKPGRDPRDELPQPIFRT
DVLKLEDLQVGMELMGTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHPSEVVQVGDVVRVKVIEVDLKRQRIGLSMK
LGDPPAAERPRETGRSREARRKRAERQLSLEEQVQMLREKFKRL
>Mature_763_residues
SQDAIHARLARELGLTVGQVERCVALLDEGNTVPFIARYRKEATGEMDETQIRTLQERLAYLRNLEAEKEKVLRVIAEQG
KLTPELERAIREAEKLQEVEDLYRPYRPKRRTRAMIARERGLEPLAQQMLAQAETAGSPEQIAATYVNPELGVASAEEAL
AGARDIVAEIVSDDAAVRKMARELTFARGVIRSAASDKGEPEKAREFEMYFDFQEPVRTLPPHRVLALNRGERLECLKVT
LEAPEEEIIARIERQYVTGRSIWENHLREAIADAYRRLIAPSIETEIRNEITEKAEEHAIRLFAMNLRNLLLQPPIKGMT
VMGIDPGYRTGCKVAVVDETGRVLETGVIYVTLGERQRQQGEEVLVRLVDKHKVDLIAIGNGTASRETEQVVASIIPRCS
HPTAYMIVSEAGASVYSASKVAQEEFPDFDVTLRSAVSIARRAQDPLAELVKIDPKSIGVGLYQHDVNQRRLAEQLGAVV
ESVVNAVGVDLNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGLGPKAFEQCAGFLRVTDGVEPLDNTA
VHPESYALAEAILKAVGATREQLIGKGSAGLRDALKKLSPEQVAAELGAGVPTVRDIIEALSKPGRDPRDELPQPIFRTD
VLKLEDLQVGMELMGTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHPSEVVQVGDVVRVKVIEVDLKRQRIGLSMKL
GDPPAAERPRETGRSREARRKRAERQLSLEEQVQMLREKFKRL

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=770, Percent_Identity=35.7142857142857, Blast_Score=440, Evalue=1e-123,
Organism=Homo sapiens, GI27597090, Length=552, Percent_Identity=23.5507246376812, Blast_Score=96, Evalue=2e-19,
Organism=Escherichia coli, GI87082262, Length=760, Percent_Identity=48.6842105263158, Blast_Score=649, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=82, Percent_Identity=52.4390243902439, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI145693187, Length=74, Percent_Identity=47.2972972972973, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=750, Percent_Identity=32.5333333333333, Blast_Score=302, Evalue=4e-82,
Organism=Caenorhabditis elegans, GI17552892, Length=337, Percent_Identity=30.5637982195846, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI62484314, Length=747, Percent_Identity=34.2704149933066, Blast_Score=401, Evalue=1e-111,
Organism=Drosophila melanogaster, GI24640080, Length=726, Percent_Identity=23.1404958677686, Blast_Score=124, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84988; Mature: 84856

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDAIHARLARELGLTVGQVERCVALLDEGNTVPFIARYRKEATGEMDETQIRTLQERL
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AYLRNLEAEKEKVLRVIAEQGKLTPELERAIREAEKLQEVEDLYRPYRPKRRTRAMIARE
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RGLEPLAQQMLAQAETAGSPEQIAATYVNPELGVASAEEALAGARDIVAEIVSDDAAVRK
HCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
MARELTFARGVIRSAASDKGEPEKAREFEMYFDFQEPVRTLPPHRVLALNRGERLECLKV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCCEEEHHE
TLEAPEEEIIARIERQYVTGRSIWENHLREAIADAYRRLIAPSIETEIRNEITEKAEEHA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IRLFAMNLRNLLLQPPIKGMTVMGIDPGYRTGCKVAVVDETGRVLETGVIYVTLGERQRQ
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCEEECCEEEEEECCHHHH
QGEEVLVRLVDKHKVDLIAIGNGTASRETEQVVASIIPRCSHPTAYMIVSEAGASVYSAS
HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
KVAQEEFPDFDVTLRSAVSIARRAQDPLAELVKIDPKSIGVGLYQHDVNQRRLAEQLGAV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHCCHHHHHHHHHHHH
VESVVNAVGVDLNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGLGPKA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
FEQCAGFLRVTDGVEPLDNTAVHPESYALAEAILKAVGATREQLIGKGSAGLRDALKKLS
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHCC
PEQVAAELGAGVPTVRDIIEALSKPGRDPRDELPQPIFRTDVLKLEDLQVGMELMGTVRN
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVDFGAFVDIGVHEDGLVHVSQLSHKYVKHPSEVVQVGDVVRVKVIEVDLKRQRIGLSMK
HHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHCCCEEEEEEEEHHHHHHCCCEEE
LGDPPAAERPRETGRSREARRKRAERQLSLEEQVQMLREKFKRL
CCCCCCCCCCHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQDAIHARLARELGLTVGQVERCVALLDEGNTVPFIARYRKEATGEMDETQIRTLQERL
CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AYLRNLEAEKEKVLRVIAEQGKLTPELERAIREAEKLQEVEDLYRPYRPKRRTRAMIARE
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RGLEPLAQQMLAQAETAGSPEQIAATYVNPELGVASAEEALAGARDIVAEIVSDDAAVRK
HCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
MARELTFARGVIRSAASDKGEPEKAREFEMYFDFQEPVRTLPPHRVLALNRGERLECLKV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCCEEEHHE
TLEAPEEEIIARIERQYVTGRSIWENHLREAIADAYRRLIAPSIETEIRNEITEKAEEHA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IRLFAMNLRNLLLQPPIKGMTVMGIDPGYRTGCKVAVVDETGRVLETGVIYVTLGERQRQ
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCEEECCEEEEEECCHHHH
QGEEVLVRLVDKHKVDLIAIGNGTASRETEQVVASIIPRCSHPTAYMIVSEAGASVYSAS
HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
KVAQEEFPDFDVTLRSAVSIARRAQDPLAELVKIDPKSIGVGLYQHDVNQRRLAEQLGAV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHCCHHHHHHHHHHHH
VESVVNAVGVDLNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGLGPKA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
FEQCAGFLRVTDGVEPLDNTAVHPESYALAEAILKAVGATREQLIGKGSAGLRDALKKLS
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHCC
PEQVAAELGAGVPTVRDIIEALSKPGRDPRDELPQPIFRTDVLKLEDLQVGMELMGTVRN
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVDFGAFVDIGVHEDGLVHVSQLSHKYVKHPSEVVQVGDVVRVKVIEVDLKRQRIGLSMK
HHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHCCCEEEEEEEEHHHHHHCCCEEE
LGDPPAAERPRETGRSREARRKRAERQLSLEEQVQMLREKFKRL
CCCCCCCCCCHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]