| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is grdC [H]
Identifier: 51894003
GI number: 51894003
Start: 3088395
End: 3091067
Strand: Reverse
Name: grdC [H]
Synonym: STH2865
Alternate gene names: 51894003
Gene position: 3091067-3088395 (Counterclockwise)
Preceding gene: 51894004
Following gene: 51894002
Centisome position: 86.68
GC content: 73.77
Gene sequence:
>2673_bases ATGACCGAGCCTGTCATCCGCGGGGCGGCCTACTGCCTGATCCACGCCCCGAACCTGCTGGTACACTACGGCACCACGCC GGCGATGGAGCGTCGGCTGAACCCGGAAAGCCCGTACCTGGCCAGGCTGCCCCGGCACCTGCGCAGCTTCGAGGAGGCCC TGGCCTACCCGCCCAACCAGACCTACCTGGGCCGTCTCCGGCCCGACGAGCTGGCCCGGATCCCCCGCCCCTGGTACGAG CACCCGGTGGAGGGGGCGGAGCGGGAAGCCCGGTACGGCGAGATGATGCCGGAGGATGAGTTCCTGGCCCTCCTGAAACT GGTCGACGCGTTCGATCTGGTCCGGCTGGAGGCCGGTTTCGCCGCAGAGATGGCCGAGCGGCTGGCCGCGCACCCGCTCT GGGCGGCGGACGCCGCCCGGCTGGGGACGGGCGTCGAGCAGGCCGAACTGCAGCGGCTGCTGGAGGAGAAGGCGGCTCCC CTGTACCTGGGCGACCGGCTGGTGGGGGTCGTCCGCCGGGCCCACGAGCACGACGAGACGCTCTCCAGCCACGTGATGCT GGAGAACCTGGTGACCAAAGCCTCCGCGGTGCTGGGGCTCCGGCACCTCTTTGCCAGGACCGGCGTAAAGCCGGAGGAGG TCGAGTACATTATTGAGTGCTCGGAAGAGGCGTGCGGCGACATGAACCAGCGGGGCGGTGGCAACTTCGCCAAGGCCATC GGCGAGATGGCCGGCTGTGTGAACGCCACCGGCTCCGACACCCGCTCCTTCTGCGCAGGTCCCACCCACGCCCTCATCGA GGCGGCCGCCCTGATCAGGGCCGGCGTGTTCCGGCACGTGGTGGTGCTGGCGGGCGGCACCCCGGCCAAGCTCGGGCTGA ACTCCCGCGACCACGTGGCCAAGGGGCTGCCGGTGCTGGAGGACGTCATCGGCGCCTTCGCGGTCCACCTCTCGGCCGAC GACCACACGAGCCCCCGGGTGCGGCTCGACGTGGTGGGCCGGCACAAGATCGGCTCGGGCTCCTCGCCCCAGGCGGTGAT GGAGGCCCTGGTGACCGAGCCGCTGGAGCGCGCGGGGCTGAAGCTCTCCGACGTGGATCGGTACGGCGTCGAGATGCAGA ACCCTGAGCTCACCGAGCCCGCGGGGGCCGGCGACGTGCCCCAGGCCAACTACAAGATGATCGCCGCGCTGGCGGTGAAG CGGGGCGAGATCGGCCGGGCGGAGCTGCCTGCCTTCGTCGCCGCCCACGGCATGCCCGGCTTCGCGCCGACCCAGGGGCA CATCCCCTCCGGCGTGCCGGTGATCGGCCACGTGCGGGACGCGATCATGGCCGGTGAGATCCGGCGGGCGATGGTCATCG GCAAGGGGTCGCTCTTCCTGGGCCGCATGACCAACCTGTTCGACGGCGTGTCGGTGCTGCTGGAGCGGAACCCGGGCCCC CAGCCCGGGGAAGCGGCTGACGCACCCGGCGGCGCGCCCGCAGAGGCCGGCGCGCCTGCCCCGAAGCCGGTCCGCCCGGC GGTGGGCATCACGCTGCACGGCAGCGAGCTGGGCGAGGAGGAGGTCCTGCGGGCGGCTGAGCAGGCCCGGCGGCAGTGGC CGGACATCGAGGTGGTGCTCATCGGCAGGCCGCCCCGGGAGACGCCGGTTCGCTGGGTGGAGGCCGGCGACGGGTGCCTC GCCGACGAGCACCGGACCATGGAGCGGATGCTGGCCGCGGGCGAGCTGGCGGCAGCGGTGACGCTGCACTACGCGTTCCC GATCGGCGTGGCCACGGTGGGCCGGGTCATCACCCCCGCCCGCGGCCGCGAGATGCTGATCGCGACCACCACCGGCACGG CCGCGGCTGACCGGGTCGAGGCGATGGTGCGCGCCGCGATCGGCGGCATCGCCGTCGCCCGGGCGCTGGGACTGACCGAC CCGACGGTGGGCATCCTGAACGTGGACGGCGCCCGCCAGGCCGAGCGGGTCCTGGAGGCGCTGCGCACGGGCGGCTATCC CTTCCGGTGGGCGGCGTCCGGCCGGGCCGACGGCGGCGCCCTGATGCGGGGCAACGACGTGCTGACCGGCGAGCCCGACG TGCTGGTGACCGACAGCCTGACGGGCAACCTGCTGATGAAGCTGATCTCGGCCCAGTCCACCGGCGGCAGCTACGAGGCG ACCGGCTACGGCTACGGCCCCGGGGTCGGCCCCGAGCAGCGGCAGATCGTCCACATCATCAGCCGGGCGTCCGGCGCGCC GGTCATCGCCGGGGCGATCCGGTACGCCGCGGACATGGCCCGGGGCAACCTGCCGCAGGTGGTGGCGCAGGAATACGCCC GTGCCCGGGAGGCCGGGCTGGACCGGCTGCTGGCGGAGCGGCGCGGGGCCGGCGGAGGCCAGATCCGTCCGCAGGCAGGC CCGGATGCCGTGGCGGGGCCGCAGGCCGGCGCAGAGGCTGGCGGCACGGTCGCCGCCCCGGACGGCCCGGCAGCGGCGCC GCCCGAGAAGGTGGCGACGGCGGAGATCCCCGGCGTTGACATCCTCGACCTGGAGGAGGCGGTGGCCTGCCTGTGGCGGC GGGGCATCTACGCCAAGTCCGGCATGGGCTGCACCGGCCCGGTGGTCCTGGTGGCCGATGAGGACCTGGAAGCCGCCCGG ACCGCGCTGAAGGAGGCCGGCTTCCTCGGGTAA
Upstream 100 bases:
>100_bases GCCCGGTTCGTAGCGGCGTGCGCGGCGATGGACCGGTCCACCGGCGGGGTACCCTGCACCCGGCGACTGCCCCGGCGCGC GACGAAGGAGAGTGATGCCC
Downstream 100 bases:
>100_bases AGTCGCGACGGAGGAGTTTTCCCGCCGCCGCCGAACAGATGAAGGGTTGTGCGGGTTCGCGGGACCCGAAATGTGAAGGA GGCGGCGGGATGGCATCCTG
Product: glycine reductase complex C
Products: NA
Alternate protein names: Protein PC beta [H]
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MTEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQTYLGRLRPDELARIPRPWYE HPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGFAAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAP LYLGDRLVGVVRRAHEHDETLSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVAKGLPVLEDVIGAFAVHLSAD DHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGLKLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVK RGEIGRAELPAFVAAHGMPGFAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVLIGRPPRETPVRWVEAGDGCL ADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPARGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTD PTVGILNVDGARQAERVLEALRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGLDRLLAERRGAGGGQIRPQAG PDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVDILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAAR TALKEAGFLG
Sequences:
>Translated_890_residues MTEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQTYLGRLRPDELARIPRPWYE HPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGFAAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAP LYLGDRLVGVVRRAHEHDETLSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVAKGLPVLEDVIGAFAVHLSAD DHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGLKLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVK RGEIGRAELPAFVAAHGMPGFAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVLIGRPPRETPVRWVEAGDGCL ADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPARGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTD PTVGILNVDGARQAERVLEALRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGLDRLLAERRGAGGGQIRPQAG PDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVDILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAAR TALKEAGFLG >Mature_889_residues TEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQTYLGRLRPDELARIPRPWYEH PVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGFAAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAPL YLGDRLVGVVRRAHEHDETLSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAIG EMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVAKGLPVLEDVIGAFAVHLSADD HTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGLKLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVKR GEIGRAELPAFVAAHGMPGFAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGPQ PGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVLIGRPPRETPVRWVEAGDGCLA DEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPARGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTDP TVGILNVDGARQAERVLEALRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEAT GYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGLDRLLAERRGAGGGQIRPQAGP DAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVDILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAART ALKEAGFLG
Specific function: In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a c
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013751 - InterPro: IPR017236 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF08545 ACP_syn_III [H]
EC number: =1.21.4.2; =1.21.4.3; =1.21.4.4 [H]
Molecular weight: Translated: 93739; Mature: 93608
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQ CCCCHHCCCEEEEEECCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC TYLGRLRPDELARIPRPWYEHPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGF CEECCCCHHHHHHCCCCHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH AAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAPLYLGDRLVGVVRRAHEHDET HHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH LSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCCCCHHHHHH GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVA HHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHH KGLPVLEDVIGAFAVHLSADDHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGL HCCHHHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC KLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVKRGEIGRAELPAFVAAHGMPG EEECHHHHCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHCCHHHHHCCCCC FAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVL CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE IGRPPRETPVRWVEAGDGCLADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPA ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTDPTVGILNVDGARQAERVLEA CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH LRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA HHCCCCCEEEECCCCCCCCEEEECCEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCCCC TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGL CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH DRLLAERRGAGGGQIRPQAGPDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVD HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCC ILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAARTALKEAGFLG EECHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCC >Mature Secondary Structure TEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQ CCCHHCCCEEEEEECCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC TYLGRLRPDELARIPRPWYEHPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGF CEECCCCHHHHHHCCCCHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH AAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAPLYLGDRLVGVVRRAHEHDET HHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH LSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCCCCHHHHHH GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVA HHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHH KGLPVLEDVIGAFAVHLSADDHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGL HCCHHHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC KLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVKRGEIGRAELPAFVAAHGMPG EEECHHHHCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHCCHHHHHCCCCC FAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVL CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE IGRPPRETPVRWVEAGDGCLADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPA ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTDPTVGILNVDGARQAERVLEA CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH LRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA HHCCCCCEEEECCCCCCCCEEEECCEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCCCC TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGL CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH DRLLAERRGAGGGQIRPQAGPDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVD HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCC ILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAARTALKEAGFLG EECHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8223622; 1587286 [H]