| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is bp26 [H]
Identifier: 51893745
GI number: 51893745
Start: 2798967
End: 2799650
Strand: Reverse
Name: bp26 [H]
Synonym: STH2607
Alternate gene names: 51893745
Gene position: 2799650-2798967 (Counterclockwise)
Preceding gene: 51893746
Following gene: 51893740
Centisome position: 78.51
GC content: 75.73
Gene sequence:
>684_bases ATGGGCACGTTCATGGGTTACCCCGCGGGCTTCGCCGCCGGGCCGGTGGAACCGCCGACGCTCCAGGTGACGGGGGTGGG GGAGGCCGGGGCGGCGCCGGACACCGCACGCCTGACCCTGGGCTTCACGGCGCGGGCGCCGCAGGCCGCGGCAGCCTACG AGCAGACTGCGGCCGCGCTGAACCGGGTGGTGCAGGCCCTGATGCAGGCGGGACTCGCCGCCGATCAGATGCAGACGCAG GAGGTTGCGCTGAACCCAGTGTTCGACCGGCCCCGGGATGGCGGCGAAACCCGGCTCACCGGTTACGAGGCGACGGCGAC CCTCGCCGTCACCTTGCGGGATCTGGCCCGGGTGGGGGCGATCATCGACCTGGCGGTCTCCGCCGGCGCCAACCGGGTCG ACGGGGTGCAGTTCACGGTGCGCGAGCGGGAGCGGGCGGAGGCGGCGGCTCTGACGCAGGCGGTGCAGGATGCGCAGCGG CAGGCGGCAGTCCTGGCCCGGGCCCTGGGGGTGGCCCTGGGGCCGGTGCGGGAGGTGAGCACGGAGGCGGCGCCGGGGCC ATCGCCGTATCTCGCCCGCTCGGCCGCAGAGGGGATACCCGTGCTGCCCGGCCGGCTGGCGGTGGTGCGCACCGTGCGGC TGGCGTACCAGATCCACCCGTCGGTCACGGCCCGGGCGCGGTGA
Upstream 100 bases:
>100_bases CCGGCCCGGGCCTTCCTCGTGCGCCACGGTCGCGGGCCTATCCGGGCGTGCGGCGCGATAGATTGTTCGCGACGACGCAC GCGGGAAGGAGGAGCGCACG
Downstream 100 bases:
>100_bases GGCCGGGGATGGTGCCCCGGGCGAAGGGGCCTACCCCCCGCCGCCCGCGGGCATCGTCGCCCGCACGTACCACATCCAGG GCCGGAAGCCTGCGATGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MGTFMGYPAGFAAGPVEPPTLQVTGVGEAGAAPDTARLTLGFTARAPQAAAAYEQTAAALNRVVQALMQAGLAADQMQTQ EVALNPVFDRPRDGGETRLTGYEATATLAVTLRDLARVGAIIDLAVSAGANRVDGVQFTVRERERAEAAALTQAVQDAQR QAAVLARALGVALGPVREVSTEAAPGPSPYLARSAAEGIPVLPGRLAVVRTVRLAYQIHPSVTARAR
Sequences:
>Translated_227_residues MGTFMGYPAGFAAGPVEPPTLQVTGVGEAGAAPDTARLTLGFTARAPQAAAAYEQTAAALNRVVQALMQAGLAADQMQTQ EVALNPVFDRPRDGGETRLTGYEATATLAVTLRDLARVGAIIDLAVSAGANRVDGVQFTVRERERAEAAALTQAVQDAQR QAAVLARALGVALGPVREVSTEAAPGPSPYLARSAAEGIPVLPGRLAVVRTVRLAYQIHPSVTARAR >Mature_226_residues GTFMGYPAGFAAGPVEPPTLQVTGVGEAGAAPDTARLTLGFTARAPQAAAAYEQTAAALNRVVQALMQAGLAADQMQTQE VALNPVFDRPRDGGETRLTGYEATATLAVTLRDLARVGAIIDLAVSAGANRVDGVQFTVRERERAEAAALTQAVQDAQRQ AAVLARALGVALGPVREVSTEAAPGPSPYLARSAAEGIPVLPGRLAVVRTVRLAYQIHPSVTARAR
Specific function: Unknown
COG id: COG2968
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007497 [H]
Pfam domain/function: PF04402 DUF541 [H]
EC number: NA
Molecular weight: Translated: 23450; Mature: 23319
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTFMGYPAGFAAGPVEPPTLQVTGVGEAGAAPDTARLTLGFTARAPQAAAAYEQTAAAL CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH NRVVQALMQAGLAADQMQTQEVALNPVFDRPRDGGETRLTGYEATATLAVTLRDLARVGA HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH IIDLAVSAGANRVDGVQFTVRERERAEAAALTQAVQDAQRQAAVLARALGVALGPVREVS HHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TEAAPGPSPYLARSAAEGIPVLPGRLAVVRTVRLAYQIHPSVTARAR CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure GTFMGYPAGFAAGPVEPPTLQVTGVGEAGAAPDTARLTLGFTARAPQAAAAYEQTAAAL CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH NRVVQALMQAGLAADQMQTQEVALNPVFDRPRDGGETRLTGYEATATLAVTLRDLARVGA HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH IIDLAVSAGANRVDGVQFTVRERERAEAAALTQAVQDAQRQAAVLARALGVALGPVREVS HHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TEAAPGPSPYLARSAAEGIPVLPGRLAVVRTVRLAYQIHPSVTARAR CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8748294 [H]