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The map label for this gene is ykfC [H]

Identifier: 51893697

GI number: 51893697

Start: 2746116

End: 2747405

Strand: Reverse

Name: ykfC [H]

Synonym: STH2559

Alternate gene names: 51893697

Gene position: 2747405-2746116 (Counterclockwise)

Preceding gene: 51893699

Following gene: 51893696

Centisome position: 77.04

GC content: 64.57

Gene sequence:

>1290_bases
ATGGAGCAGGTGGTGGCCAGGGAGAACATGCTGGCCGCCCTGAAACGGGTGGAGCGGAACGGAGGCGCTCCCGGCGTGGA
CGGTGTCCCCACCGAACGGCTGCGGGACCAGATTCGCGTGGAGTGGAGCCGCATCCGTGAGGGACTGCTCCAGGGGACCT
ACAGACCGCAGCCAGTCCGCCGGGTCGAAATCCCGAAACCGGGCGGCGGCAAGCGGATGCTGGGGATTCCCACCGTGATG
GACCGCCTGATCCAACAGGCACTCCTGCAAGTACTGACGCCGATCTTTGACCCGACATTCTCCGAATCCAGCTACGGCTT
TCGGCCGGGGCGGCGGGGTCATGATGCGGTCAGGAAGGCACGTCAGTACGTGGAGGAAGGGTACGACTGGGTCGTGGACA
TGGACCTGGAGAAGTTCTTCGACCGGGTCAACCACGACGTGCTGATGGCCCGCGTGGCGCGGCGGGTAACGGATAAGCGT
GTGCTGCGGCTGATCCGGCGGTACTTACAGGCTGGGGTCATGCTGAACGGGGTAGTCGTGGCGACGGAGGAAGGGACGCC
GCAGGGCGGTCCGCTGAGCCCGCTGCTGGCGAACATCCTGCTGGATGACCTCGACAAGGAGCTGGAGCGCCGCGGGCACC
ACTTCGTCCGGTACGCCGATGACTGCAACATCTACGTCCGCAGCAAGCGGGCGGGAGAACGGGTCTACAGGAGCGTGCGC
CACTTCCTGCAGGAGCGGTTACGGCTGAAGGTCAACGAGGAGAAGAGCGCAGTGGACCGGCCGTGGAAGCGGCAGTTCCT
CGGGTTTAGTTTCTACAAGCACCGGGGAGTGCGCATCCGGCTGGCCCCGAAGAGCCTGAAGCGCGTGAAGGACAAGCTCC
GCACGCTGACGGACCGCAACCGCAGCCAGAGCATGGAGGACCGAATCCGGCGCCTGAATGCTTACTTGCGGGGCTGGGTT
GGGTACTATGCGCTCTCCGATGCCAGGTCAGCCTTTGAAAGACTCGAAGGATGGCTGAAGCGTCGGCTGCGAGCATGCGT
ATGGAAGCAGTGGAAGCGTGTACGCACGCGCTTTCGGGAGTTGCGCGCCCTCGGTTTGCCCGAATGGGTAGTCCACCAAC
TCGCCAACAGCCGCAAAGGCCCGTGGCGGATGGCAGGTGGCCCACTAAACAGCGCCCTGGGCGACGCCTACTGGCGTGCC
CAGGGGCTGATAAGCCTGACCGAATGCTATGAAGCGACTCGTCAATCCTGGCGAACCGCCGGATGCGGACCCGCATGTCC
GGTGGTGTGA

Upstream 100 bases:

>100_bases
CTCGCCGGAGGTAGCGGTGAAGCCGCAAGGGACGGCGAGAGGGCGGAGTGGGCAGCCGGCACAAGACGGAACGTTACCCC
GCGGGGAGCACAGCAACCTG

Downstream 100 bases:

>100_bases
GAGGACGGGGGCTAGCCGCCCCCTCCTACTCGATTTTTCTGACCACTTGTTGCGAAAGGAGCTTGACACGATGTCCAGCG
TCGTGCACGTGACCCTGCCG

Product: group II intron-encoding maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREGLLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRIRRLNAYLRGWV
GYYALSDARSAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRA
QGLISLTECYEATRQSWRTAGCGPACPVV

Sequences:

>Translated_429_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREGLLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRIRRLNAYLRGWV
GYYALSDARSAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRA
QGLISLTECYEATRQSWRTAGCGPACPVV
>Mature_429_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREGLLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRIRRLNAYLRGWV
GYYALSDARSAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRA
QGLISLTECYEATRQSWRTAGCGPACPVV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=222, Percent_Identity=31.5315315315315, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=355, Percent_Identity=26.4788732394366, Blast_Score=109, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49870; Mature: 49870

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREGLLQGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVV
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEE
ATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRN
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCH
RSQSMEDRIRRLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWKQWKRVRTRFRE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRAQGLISLTECYEATRQSWRTA
HHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GCGPACPVV
CCCCCCCCC
>Mature Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREGLLQGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVV
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEE
ATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRN
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCH
RSQSMEDRIRRLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWKQWKRVRTRFRE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRAQGLISLTECYEATRQSWRTA
HHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GCGPACPVV
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]