| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is thrS
Identifier: 51893696
GI number: 51893696
Start: 2744090
End: 2746045
Strand: Reverse
Name: thrS
Synonym: STH2558
Alternate gene names: 51893696
Gene position: 2746045-2744090 (Counterclockwise)
Preceding gene: 51893697
Following gene: 51893695
Centisome position: 77.0
GC content: 67.23
Gene sequence:
>1956_bases ATGTCCAGCGTCGTGCACGTGACCCTGCCGGACGGCAGCGTGCGGGAGTACCCGCAGGGAATCACCATTGCCGAGGCGGT GGCCCAGATCGGGCCGCGGCTGGCGAAGGCCGCGCTCGCCGCGAAGGTGGACGGCCGGCTCGTCGACCTGTCCGCCCGAC TCGAGAAGGACTGCACCCTGCAGGTCCTGACCTTCAAGGATGAGGAGGGCCGCGAGGTCTTCCGCCACACCTCCACCCAC ATCATGGCCCAGGCGGTGAAGCGGCTCTTCCCGGAGGCCAAGCTGACCGTCGGCCCGCCCCTGGAAAACTCCTTCTACTA CGATTTCGACCTGCCCCGGCCCCTGACGCCGGAGGACCTGGAGAAGATCGAGGCCGAGATGGCCAAGATCGTCGAGGCCG ACTACCCCATCGTCCGCCAGGAGGTGGACCGGGAGGAAGCCAAGCGGTTCTTCGCCGAGCGCGGCGAGGACTACAAGGTG CTCCTGGTCGACAAGATCCCCGAGGACGAGGTGGTGTCGATCTACACCCAGGGCGAGTTCACCGACCTGTGCGTGGGCCC GCACCTGCCCTCCACCGGCCGGGTGAAGGCGTTTAAGCTGCTGAGCGTCGCCGGCGCCTACTGGGAGGGGAACCAGGCCA ACAAGCAGCTCCAGCGGGTCTACGGTACCTCCTTCGAGTCGAAGAAAGACCTGGAGGATTACCTGTTCCGGCTGGAGGAG GCCAGGCGGCGCGACCACCGCAGACTGGGCCCGGAGCTGGGGCTGTACCGGTTCGAGGAGGTGGCTCCCGGCTTCGCCTT CTGGCTCGACAAGGGCTACCGGCTCTACCGGGAGCTGGAGAACTGGAGCCGGAAGCTGCAGGAGGCCCGGGGGTACGAGG AGGTCAGCACGCCGTGGATCGTCTCGTCCAAGCTGTATGAGACGTCGGGCCACTGGCAGCATTACCGGCAGAACATGTTC GAGATCCGGGCGGAGGACCAGGACTTCGCCACCAAGCCGATGAACTGCCCGTGCCACTGCGTGCTGTACAAGAGCCAGAT CCGGTCCTACCGGGACCTGCCGCTGAAGATCGCCGAGTACGGTCCGCTCTCCCGCTTCGAGGCCTCGGGCACGCTCCACG GTCTGCTGCGGGTGCGGGGCTTCCATCAGGACGACGCCCACCTCTTCGTGCGGCCGGATCAGATCGAGGAGCAGATCCGG GAGGTCATCGGCCTGGTGGACACCATCTACGGCACTCTGGGGCTGGAGTACGAGATCAAGCTCTCCACCCGGCCGGAGGA CTTCATGGGCGACATCGAGCTGTGGAACGAGGCCGAGGCCGCCCTCGCCCGGGCGCTGGACGGCATGGGCCGCAGCTACA AGCTGAACCCCGGCGACGGCGCGTTCTACGGGCCGAAGCTGGACTTCGACGTCACCGACGCCCTGGGCCGCAAGTGGCAG TGCGCCACGGTGCAGCTGGACTTCCAGCTTCCCATCAAGTTCGACCTTACCTATATCGGCGAGGACGGCAAGGAGCACCG GCCGGTGATGATCCACCGGGCGATCATGGGCACGCTGGAGCGGTTCATCGGTATCCTCACCGAGCACTACGCCGGCAACT TCCCGCTGTGGATGGCCCCGGTGCAGGCCCGGGTGCTGCCCATCACGGACCGGCACCACGCGTACGCGGGCGAGGTGGTG GCGAAGCTGCAGGAGGCCGGGTTGCGGGTCGAGGGCGACTACCGCAACGAGAAGGTGGGTTACAAGATCCGCGAGGCGGA GCTGCTGAAGATCCCCTTCATCCTGGTCGTCGGCGACAAGGAGGCCGAAGCGGGCGCCGTGGCGGTGCGCCGCCGGGGCA TGAAGGACCTGGGTCCCATGCCGCTGGCCGACTTCCTGGCACTGGCGCAGTCGGAGATCGCCTCCAAGGCCATGGATGAG GCCTGCCGCAAGGCGGCCTCCGGGACGAGGGACTAG
Upstream 100 bases:
>100_bases GGATGCGGACCCGCATGTCCGGTGGTGTGAGAGGACGGGGGCTAGCCGCCCCCTCCTACTCGATTTTTCTGACCACTTGT TGCGAAAGGAGCTTGACACG
Downstream 100 bases:
>100_bases GACCGGGGCGGCTTGTCAGATGGGGCCCGGGCCGGGTCACACGGGTCCGGGCCCAGCCATCCCGTCCGTCCTGCGGCGGT TGGGCGGAGGTTTCTGACGG
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS
Number of amino acids: Translated: 651; Mature: 650
Protein sequence:
>651_residues MSSVVHVTLPDGSVREYPQGITIAEAVAQIGPRLAKAALAAKVDGRLVDLSARLEKDCTLQVLTFKDEEGREVFRHTSTH IMAQAVKRLFPEAKLTVGPPLENSFYYDFDLPRPLTPEDLEKIEAEMAKIVEADYPIVRQEVDREEAKRFFAERGEDYKV LLVDKIPEDEVVSIYTQGEFTDLCVGPHLPSTGRVKAFKLLSVAGAYWEGNQANKQLQRVYGTSFESKKDLEDYLFRLEE ARRRDHRRLGPELGLYRFEEVAPGFAFWLDKGYRLYRELENWSRKLQEARGYEEVSTPWIVSSKLYETSGHWQHYRQNMF EIRAEDQDFATKPMNCPCHCVLYKSQIRSYRDLPLKIAEYGPLSRFEASGTLHGLLRVRGFHQDDAHLFVRPDQIEEQIR EVIGLVDTIYGTLGLEYEIKLSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLDFDVTDALGRKWQ CATVQLDFQLPIKFDLTYIGEDGKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLWMAPVQARVLPITDRHHAYAGEVV AKLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDKEAEAGAVAVRRRGMKDLGPMPLADFLALAQSEIASKAMDE ACRKAASGTRD
Sequences:
>Translated_651_residues MSSVVHVTLPDGSVREYPQGITIAEAVAQIGPRLAKAALAAKVDGRLVDLSARLEKDCTLQVLTFKDEEGREVFRHTSTH IMAQAVKRLFPEAKLTVGPPLENSFYYDFDLPRPLTPEDLEKIEAEMAKIVEADYPIVRQEVDREEAKRFFAERGEDYKV LLVDKIPEDEVVSIYTQGEFTDLCVGPHLPSTGRVKAFKLLSVAGAYWEGNQANKQLQRVYGTSFESKKDLEDYLFRLEE ARRRDHRRLGPELGLYRFEEVAPGFAFWLDKGYRLYRELENWSRKLQEARGYEEVSTPWIVSSKLYETSGHWQHYRQNMF EIRAEDQDFATKPMNCPCHCVLYKSQIRSYRDLPLKIAEYGPLSRFEASGTLHGLLRVRGFHQDDAHLFVRPDQIEEQIR EVIGLVDTIYGTLGLEYEIKLSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLDFDVTDALGRKWQ CATVQLDFQLPIKFDLTYIGEDGKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLWMAPVQARVLPITDRHHAYAGEVV AKLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDKEAEAGAVAVRRRGMKDLGPMPLADFLALAQSEIASKAMDE ACRKAASGTRD >Mature_650_residues SSVVHVTLPDGSVREYPQGITIAEAVAQIGPRLAKAALAAKVDGRLVDLSARLEKDCTLQVLTFKDEEGREVFRHTSTHI MAQAVKRLFPEAKLTVGPPLENSFYYDFDLPRPLTPEDLEKIEAEMAKIVEADYPIVRQEVDREEAKRFFAERGEDYKVL LVDKIPEDEVVSIYTQGEFTDLCVGPHLPSTGRVKAFKLLSVAGAYWEGNQANKQLQRVYGTSFESKKDLEDYLFRLEEA RRRDHRRLGPELGLYRFEEVAPGFAFWLDKGYRLYRELENWSRKLQEARGYEEVSTPWIVSSKLYETSGHWQHYRQNMFE IRAEDQDFATKPMNCPCHCVLYKSQIRSYRDLPLKIAEYGPLSRFEASGTLHGLLRVRGFHQDDAHLFVRPDQIEEQIRE VIGLVDTIYGTLGLEYEIKLSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLDFDVTDALGRKWQC ATVQLDFQLPIKFDLTYIGEDGKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLWMAPVQARVLPITDRHHAYAGEVVA KLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDKEAEAGAVAVRRRGMKDLGPMPLADFLALAQSEIASKAMDEA CRKAASGTRD
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI38570111, Length=623, Percent_Identity=42.3756019261637, Blast_Score=528, Evalue=1e-150, Organism=Homo sapiens, GI38202255, Length=645, Percent_Identity=42.1705426356589, Blast_Score=522, Evalue=1e-148, Organism=Homo sapiens, GI20070344, Length=636, Percent_Identity=39.937106918239, Blast_Score=459, Evalue=1e-129, Organism=Escherichia coli, GI1788013, Length=636, Percent_Identity=47.3270440251572, Blast_Score=642, Evalue=0.0, Organism=Caenorhabditis elegans, GI71984184, Length=634, Percent_Identity=41.9558359621451, Blast_Score=528, Evalue=1e-150, Organism=Caenorhabditis elegans, GI71984192, Length=634, Percent_Identity=41.9558359621451, Blast_Score=528, Evalue=1e-150, Organism=Saccharomyces cerevisiae, GI6322112, Length=628, Percent_Identity=41.0828025477707, Blast_Score=511, Evalue=1e-145, Organism=Saccharomyces cerevisiae, GI6322654, Length=416, Percent_Identity=37.9807692307692, Blast_Score=312, Evalue=1e-85, Organism=Drosophila melanogaster, GI24583842, Length=629, Percent_Identity=42.7662957074722, Blast_Score=535, Evalue=1e-152, Organism=Drosophila melanogaster, GI28574141, Length=629, Percent_Identity=42.7662957074722, Blast_Score=535, Evalue=1e-152, Organism=Drosophila melanogaster, GI24583839, Length=629, Percent_Identity=42.7662957074722, Blast_Score=535, Evalue=1e-152,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYT_SYMTH (Q67LA3)
Other databases:
- EMBL: AP006840 - RefSeq: YP_076387.1 - ProteinModelPortal: Q67LA3 - SMR: Q67LA3 - GeneID: 2980192 - GenomeReviews: AP006840_GR - KEGG: sth:STH2558 - NMPDR: fig|292459.1.peg.2448 - HOGENOM: HBG352811 - OMA: GFEYEVE - BioCyc: STHE292459:STH2558-MONOMER - BRENDA: 6.1.1.3 - GO: GO:0005737 - HAMAP: MF_00184_B - InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 - Gene3D: G3DSA:3.40.50.800 - Gene3D: G3DSA:3.10.20.30 - PRINTS: PR01047 - SMART: SM00863 - TIGRFAMs: TIGR00418
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD; SSF52954 Anticodon_bd; SSF81271 TGS-like; SSF55186 Thr/Ala-tRNA-synth_IIc_edit
EC number: =6.1.1.3
Molecular weight: Translated: 74078; Mature: 73947
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVVHVTLPDGSVREYPQGITIAEAVAQIGPRLAKAALAAKVDGRLVDLSARLEKDCTL CCCEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCCEE QVLTFKDEEGREVFRHTSTHIMAQAVKRLFPEAKLTVGPPLENSFYYDFDLPRPLTPEDL EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCCCHHHH EKIEAEMAKIVEADYPIVRQEVDREEAKRFFAERGEDYKVLLVDKIPEDEVVSIYTQGEF HHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCE TDLCVGPHLPSTGRVKAFKLLSVAGAYWEGNQANKQLQRVYGTSFESKKDLEDYLFRLEE EEEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH ARRRDHRRLGPELGLYRFEEVAPGFAFWLDKGYRLYRELENWSRKLQEARGYEEVSTPWI HHHHHHHHCCCHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE VSSKLYETSGHWQHYRQNMFEIRAEDQDFATKPMNCPCHCVLYKSQIRSYRDLPLKIAEY EECHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCEEEECC GPLSRFEASGTLHGLLRVRGFHQDDAHLFVRPDQIEEQIREVIGLVDTIYGTLGLEYEIK CCCCHHCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEE LSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLDFDVTDALGRKWQ ECCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCEE CATVQLDFQLPIKFDLTYIGEDGKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLWMAP EEEEEEEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC VQARVLPITDRHHAYAGEVVAKLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDK CCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCEEEEEEEEEEECCC EAEAGAVAVRRRGMKDLGPMPLADFLALAQSEIASKAMDEACRKAASGTRD CCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SSVVHVTLPDGSVREYPQGITIAEAVAQIGPRLAKAALAAKVDGRLVDLSARLEKDCTL CCEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCCEE QVLTFKDEEGREVFRHTSTHIMAQAVKRLFPEAKLTVGPPLENSFYYDFDLPRPLTPEDL EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCCCHHHH EKIEAEMAKIVEADYPIVRQEVDREEAKRFFAERGEDYKVLLVDKIPEDEVVSIYTQGEF HHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCE TDLCVGPHLPSTGRVKAFKLLSVAGAYWEGNQANKQLQRVYGTSFESKKDLEDYLFRLEE EEEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH ARRRDHRRLGPELGLYRFEEVAPGFAFWLDKGYRLYRELENWSRKLQEARGYEEVSTPWI HHHHHHHHCCCHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE VSSKLYETSGHWQHYRQNMFEIRAEDQDFATKPMNCPCHCVLYKSQIRSYRDLPLKIAEY EECHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCEEEECC GPLSRFEASGTLHGLLRVRGFHQDDAHLFVRPDQIEEQIREVIGLVDTIYGTLGLEYEIK CCCCHHCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEE LSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLDFDVTDALGRKWQ ECCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCEE CATVQLDFQLPIKFDLTYIGEDGKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLWMAP EEEEEEEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC VQARVLPITDRHHAYAGEVVAKLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDK CCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCEEEEEEEEEEECCC EAEAGAVAVRRRGMKDLGPMPLADFLALAQSEIASKAMDEACRKAASGTRD CCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA