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The map label for this gene is ybbD [H]

Identifier: 51893636

GI number: 51893636

Start: 2680762

End: 2682675

Strand: Reverse

Name: ybbD [H]

Synonym: STH2498

Alternate gene names: 51893636

Gene position: 2682675-2680762 (Counterclockwise)

Preceding gene: 51893637

Following gene: 51893635

Centisome position: 75.23

GC content: 74.66

Gene sequence:

>1914_bases
GTGCAGGCTCATACCAAGTCCTGCAGCAGATCGACCTCGTCCGGGAGGGAAGGCCATATGCCTGCGTCCAGGGTTCCGGC
GGCCGCCCGGCGGCTCGCCGGACTGCTCGTCCTTGCGCTCGCGCTGAGTCCCCTGGCGGCCTGCGCCCGGGGCGGATCGC
CCGACCGCGGCCGGCCCCCCGGGGACACCCCGGGAGTCGGGACCGGTCCGGGGGCCGAACCCGGGGCCGAACCTGGCGAA
CCGCCGGCCCCGGATTCAGCCGTTTCCGACTGGCTGGCGTACCTGACCCTGGAGGAGAAGCTCGGCCAGCTGTTCTGGGT
GGGCCTGCCGGGCACCGAGCTGACCGACGAAATCCGCGGGCTCCTCGCCGAGGGCAAGGTCGGGGGCGTCATCTTCTTCG
GCCGGCAGGGAAGCGATCCCGACGTCCTGCGCCGCCTCAGCGGGGAACTGCAGGCCGCGGCCGCCGCGCGCGACCGGGCG
ACGCCGGGACTCGTCATTGCAGTGGATCACGAGGGCGGCCTGGTGCAGCGCTTCGGCCCCCCGTTCACCCAGTGGCCCGG
GGCCATGGCGCTGGGCGCCGCGGGCTCCTCGGCGCACGCTGAGGCGATGGGCCGGGCGATGGCCCGGGAGCTGCTGGCCG
TGGGGGTGAACATGAACCTGGCGCCGGTGGCCGACGTCAATAACAATCCGGCGAATCCGGTCATCGGCACCCGCTCCTTC
GGCGAGCAGCCGGAGCTCGTGGCCCGGATGGCGGCGGCCCTGGCGGCGGGCCTGCAGGCGGAGGGGGTCAGCGCGGTGGC
CAAGCACTTCCCCGGCCACGGGGACACCGCCGTGGACAGCCACCTGGACCTGCCGGTGATCGACCACGCGCGGGAGCGGC
TGGACCGGGTGGAGCTCGTCCCCTTCCGGGCCGCCGTCGGGGCCGGGATCGACGCCGTCATGGTCGCCCACGTCGTCTTC
CCCGCGGTGGCGGGGGACGGCAGGCCGGCCAGCCTGTCGCCGGACGTGGTGACCGGCTTGCTCAAAGGAGAACTGGGGTT
TGCCGGGGTGGCCATGACCGACGCCCTGGACGGCATGGCGGCCATCACCGACACCTACGGCGTGGAGGAGGGGTTGGTGC
TGGCCGTGGAGGCCGGGGCGGACGTGCTCCTGGTCACCGAGTCCTTCGGCCGGCAGCAGGCGCTGTACCGGCGGCTGCTC
CAGGCGGTGGAAGAGGGCCGCATCCCCGAGGGCCGGGTCAACGACGCGGCGGGCAGGGTGCTGGCGCTGAAGGAGAAGCG
CGGCCTGCTTCCGCCGCTTTCCGGCGCAGCCGGGGCCGAAGGGGCGGGGCGCAGGGCCCCGGCGGAGGCCGTCGGCGCGG
CCGAGCATCAGGCGCTGGCGGACCGGATCGGCGCCGACGCCCTGACCCTGGTCCGCAACGCCCATCTGCCGCTTGCGCTG
TCCCCCGGCGAGCAGGTGGTGGTGATCGGCCCGGCCTATGCCCGGCGGCTGGACGGCGCGGACGGCGTCGTCACGGCGCT
GGGGGCCGGCATTAAGGCGATGCACGCCAACACCGTGGAGGTGGCCCTGGAGTGGCGCCCGGATCCGGATGCCATCGCGC
ACGCCCGGTCCCTGGCCGAGGGGGCCGCGGCGGTGGTCTACGCGGTGGCCGACGGCCACGAGGCCCCGGCGCACCTGGCG
CTGATCCGGGAGCTGATCGCCGCGGGCAAGCCGGTCATCGTGGTCGGCCTGGGGATGCCCTACGAACTGACGGCGGCGCC
GGAGATCGAGACCTACATCGCCGCCTACGGGTTCCGGGACGCCAACCTGAAGGGGGTCGGGCCGCTCCTGTTCGGGCGGA
CGCCGGCCCGGGGGCGGCTGCCGGTGTCCATCCCCGGACTCTACCCGGCGGGACACGGCCTGGACCTGCCGTAA

Upstream 100 bases:

>100_bases
GGGCCCGCTTCGTGGAGCTGGCGACCCATCCCGACTTCGAGGAGGTCTTCATGGAGGCGCTCAACTTCCCGCGTGTCCGC
CCGGGCGCATAGGTCCCGGG

Downstream 100 bases:

>100_bases
GGCGCACACACGAAAGGAGGCGGTTGCCGTGCGGCCTGAGACCGAGGCCGAGCGGGCGGCGCGCCACGCCGCGACCATTC
AGGCCTTCCGCGCGCTGGTG

Product: putative beta-N-acetylglucosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MQAHTKSCSRSTSSGREGHMPASRVPAAARRLAGLLVLALALSPLAACARGGSPDRGRPPGDTPGVGTGPGAEPGAEPGE
PPAPDSAVSDWLAYLTLEEKLGQLFWVGLPGTELTDEIRGLLAEGKVGGVIFFGRQGSDPDVLRRLSGELQAAAAARDRA
TPGLVIAVDHEGGLVQRFGPPFTQWPGAMALGAAGSSAHAEAMGRAMARELLAVGVNMNLAPVADVNNNPANPVIGTRSF
GEQPELVARMAAALAAGLQAEGVSAVAKHFPGHGDTAVDSHLDLPVIDHARERLDRVELVPFRAAVGAGIDAVMVAHVVF
PAVAGDGRPASLSPDVVTGLLKGELGFAGVAMTDALDGMAAITDTYGVEEGLVLAVEAGADVLLVTESFGRQQALYRRLL
QAVEEGRIPEGRVNDAAGRVLALKEKRGLLPPLSGAAGAEGAGRRAPAEAVGAAEHQALADRIGADALTLVRNAHLPLAL
SPGEQVVVIGPAYARRLDGADGVVTALGAGIKAMHANTVEVALEWRPDPDAIAHARSLAEGAAAVVYAVADGHEAPAHLA
LIRELIAAGKPVIVVGLGMPYELTAAPEIETYIAAYGFRDANLKGVGPLLFGRTPARGRLPVSIPGLYPAGHGLDLP

Sequences:

>Translated_637_residues
MQAHTKSCSRSTSSGREGHMPASRVPAAARRLAGLLVLALALSPLAACARGGSPDRGRPPGDTPGVGTGPGAEPGAEPGE
PPAPDSAVSDWLAYLTLEEKLGQLFWVGLPGTELTDEIRGLLAEGKVGGVIFFGRQGSDPDVLRRLSGELQAAAAARDRA
TPGLVIAVDHEGGLVQRFGPPFTQWPGAMALGAAGSSAHAEAMGRAMARELLAVGVNMNLAPVADVNNNPANPVIGTRSF
GEQPELVARMAAALAAGLQAEGVSAVAKHFPGHGDTAVDSHLDLPVIDHARERLDRVELVPFRAAVGAGIDAVMVAHVVF
PAVAGDGRPASLSPDVVTGLLKGELGFAGVAMTDALDGMAAITDTYGVEEGLVLAVEAGADVLLVTESFGRQQALYRRLL
QAVEEGRIPEGRVNDAAGRVLALKEKRGLLPPLSGAAGAEGAGRRAPAEAVGAAEHQALADRIGADALTLVRNAHLPLAL
SPGEQVVVIGPAYARRLDGADGVVTALGAGIKAMHANTVEVALEWRPDPDAIAHARSLAEGAAAVVYAVADGHEAPAHLA
LIRELIAAGKPVIVVGLGMPYELTAAPEIETYIAAYGFRDANLKGVGPLLFGRTPARGRLPVSIPGLYPAGHGLDLP
>Mature_637_residues
MQAHTKSCSRSTSSGREGHMPASRVPAAARRLAGLLVLALALSPLAACARGGSPDRGRPPGDTPGVGTGPGAEPGAEPGE
PPAPDSAVSDWLAYLTLEEKLGQLFWVGLPGTELTDEIRGLLAEGKVGGVIFFGRQGSDPDVLRRLSGELQAAAAARDRA
TPGLVIAVDHEGGLVQRFGPPFTQWPGAMALGAAGSSAHAEAMGRAMARELLAVGVNMNLAPVADVNNNPANPVIGTRSF
GEQPELVARMAAALAAGLQAEGVSAVAKHFPGHGDTAVDSHLDLPVIDHARERLDRVELVPFRAAVGAGIDAVMVAHVVF
PAVAGDGRPASLSPDVVTGLLKGELGFAGVAMTDALDGMAAITDTYGVEEGLVLAVEAGADVLLVTESFGRQQALYRRLL
QAVEEGRIPEGRVNDAAGRVLALKEKRGLLPPLSGAAGAEGAGRRAPAEAVGAAEHQALADRIGADALTLVRNAHLPLAL
SPGEQVVVIGPAYARRLDGADGVVTALGAGIKAMHANTVEVALEWRPDPDAIAHARSLAEGAAAVVYAVADGHEAPAHLA
LIRELIAAGKPVIVVGLGMPYELTAAPEIETYIAAYGFRDANLKGVGPLLFGRTPARGRLPVSIPGLYPAGHGLDLP

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=288, Percent_Identity=36.1111111111111, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI1788453, Length=612, Percent_Identity=24.8366013071895, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 65093; Mature: 65093

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAHTKSCSRSTSSGREGHMPASRVPAAARRLAGLLVLALALSPLAACARGGSPDRGRPP
CCCCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GDTPGVGTGPGAEPGAEPGEPPAPDSAVSDWLAYLTLEEKLGQLFWVGLPGTELTDEIRG
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
LLAEGKVGGVIFFGRQGSDPDVLRRLSGELQAAAAARDRATPGLVIAVDHEGGLVQRFGP
HHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHCCC
PFTQWPGAMALGAAGSSAHAEAMGRAMARELLAVGVNMNLAPVADVNNNPANPVIGTRSF
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
GEQPELVARMAAALAAGLQAEGVSAVAKHFPGHGDTAVDSHLDLPVIDHARERLDRVELV
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEE
PFRAAVGAGIDAVMVAHVVFPAVAGDGRPASLSPDVVTGLLKGELGFAGVAMTDALDGMA
EHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCHH
AITDTYGVEEGLVLAVEAGADVLLVTESFGRQQALYRRLLQAVEEGRIPEGRVNDAAGRV
HHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
LALKEKRGLLPPLSGAAGAEGAGRRAPAEAVGAAEHQALADRIGADALTLVRNAHLPLAL
EEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEE
SPGEQVVVIGPAYARRLDGADGVVTALGAGIKAMHANTVEVALEWRPDPDAIAHARSLAE
CCCCEEEEECHHHHHHCCCCCHHHHHHCCCHHHEECCEEEEEEEECCCHHHHHHHHHHHC
GAAAVVYAVADGHEAPAHLALIRELIAAGKPVIVVGLGMPYELTAAPEIETYIAAYGFRD
CCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHHHCCCC
ANLKGVGPLLFGRTPARGRLPVSIPGLYPAGHGLDLP
CCCCCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCC
>Mature Secondary Structure
MQAHTKSCSRSTSSGREGHMPASRVPAAARRLAGLLVLALALSPLAACARGGSPDRGRPP
CCCCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GDTPGVGTGPGAEPGAEPGEPPAPDSAVSDWLAYLTLEEKLGQLFWVGLPGTELTDEIRG
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
LLAEGKVGGVIFFGRQGSDPDVLRRLSGELQAAAAARDRATPGLVIAVDHEGGLVQRFGP
HHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHCCC
PFTQWPGAMALGAAGSSAHAEAMGRAMARELLAVGVNMNLAPVADVNNNPANPVIGTRSF
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
GEQPELVARMAAALAAGLQAEGVSAVAKHFPGHGDTAVDSHLDLPVIDHARERLDRVELV
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEE
PFRAAVGAGIDAVMVAHVVFPAVAGDGRPASLSPDVVTGLLKGELGFAGVAMTDALDGMA
EHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCHH
AITDTYGVEEGLVLAVEAGADVLLVTESFGRQQALYRRLLQAVEEGRIPEGRVNDAAGRV
HHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
LALKEKRGLLPPLSGAAGAEGAGRRAPAEAVGAAEHQALADRIGADALTLVRNAHLPLAL
EEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEE
SPGEQVVVIGPAYARRLDGADGVVTALGAGIKAMHANTVEVALEWRPDPDAIAHARSLAE
CCCCEEEEECHHHHHHCCCCCHHHHHHCCCHHHEECCEEEEEEEECCCHHHHHHHHHHHC
GAAAVVYAVADGHEAPAHLALIRELIAAGKPVIVVGLGMPYELTAAPEIETYIAAYGFRD
CCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHHHCCCC
ANLKGVGPLLFGRTPARGRLPVSIPGLYPAGHGLDLP
CCCCCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]