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The map label for this gene is yhdW [H]

Identifier: 51893596

GI number: 51893596

Start: 2644478

End: 2645188

Strand: Reverse

Name: yhdW [H]

Synonym: STH2458

Alternate gene names: 51893596

Gene position: 2645188-2644478 (Counterclockwise)

Preceding gene: 51893599

Following gene: 51893595

Centisome position: 74.18

GC content: 69.06

Gene sequence:

>711_bases
ATGCCGCAGGTGATCGGTCACAGGGGTGCCGCCGGCACCCACCCGGAGAACACCATGGTTTCGTTCCGAAGGGCCTTCGA
ACTGGGCGTCGACGGCATCGAGTTCGACGTGCACCGCACGGCCGACGGCCACCTGGTCGTCATCCACGACCCGGCGGTGG
ACCGCACCACCGACGGGTCCGGGCTGGTGATGGCCATGACGCTGGAGCAGATCCGGGCGCTGGACGCCGGCTCCTGGAAG
GACCCGCGCTTCGCCGGCGAACGGGTGCCCACCCTGCAGGAGCTGGTGCGGGCCACGCCGCCCGGGGTCCGGCTCTACCT
GGAGCTGAAGGCAGGGTCGGTGCACTACCCGGGCATCGAGCAGGAGCTGGTCGACCTGCTGAAGGCGGAGGGTGTCCTGG
ACCGTACGCAGGTCTCCTCCTTCGATCACCGCGCCCTGGTGAAGCTGAAGGAGATCTGTCCGGAGCTGCCCCTGGGCATG
CTGACCTCGAGCAACCTGGTGGACCCCGTCGGCATGGCGAAGGCGATCGGGTGCGAGGCCATCCATCCCGCGTGGCCGTG
GGTGACGCCCGAGTACGTGGAGGCCGCACACGCGGCGGGGCTGAAGGTGAACTGCTGGACGGTGAACGATCCGCTGGCGC
TCGCCCTCATGCAGAACGCCGGGGTTGACGGCATCATGACCGACTATCCGGAGCGCCTCCGGAACGGCTGA

Upstream 100 bases:

>100_bases
TCCATCAGAGGTGCTCCCTTCTCCCCAGGCGGAATTGGGTAGCACATTTCGAGACGTCTTAACTGTATTCCTTTAGCGCT
GCCAGCAGAGGTGAGGACGC

Downstream 100 bases:

>100_bases
CCAACGGGCTGAACCGTTCGCCTCCTGCGGGGCTGCAGGAGAAACGCCCCCGCACCCCGAACCTTCGTGAGGTATGCCGT
AGATTACGCAGCAGGGAGGA

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPQVIGHRGAAGTHPENTMVSFRRAFELGVDGIEFDVHRTADGHLVVIHDPAVDRTTDGSGLVMAMTLEQIRALDAGSWK
DPRFAGERVPTLQELVRATPPGVRLYLELKAGSVHYPGIEQELVDLLKAEGVLDRTQVSSFDHRALVKLKEICPELPLGM
LTSSNLVDPVGMAKAIGCEAIHPAWPWVTPEYVEAAHAAGLKVNCWTVNDPLALALMQNAGVDGIMTDYPERLRNG

Sequences:

>Translated_236_residues
MPQVIGHRGAAGTHPENTMVSFRRAFELGVDGIEFDVHRTADGHLVVIHDPAVDRTTDGSGLVMAMTLEQIRALDAGSWK
DPRFAGERVPTLQELVRATPPGVRLYLELKAGSVHYPGIEQELVDLLKAEGVLDRTQVSSFDHRALVKLKEICPELPLGM
LTSSNLVDPVGMAKAIGCEAIHPAWPWVTPEYVEAAHAAGLKVNCWTVNDPLALALMQNAGVDGIMTDYPERLRNG
>Mature_235_residues
PQVIGHRGAAGTHPENTMVSFRRAFELGVDGIEFDVHRTADGHLVVIHDPAVDRTTDGSGLVMAMTLEQIRALDAGSWKD
PRFAGERVPTLQELVRATPPGVRLYLELKAGSVHYPGIEQELVDLLKAEGVLDRTQVSSFDHRALVKLKEICPELPLGML
TSSNLVDPVGMAKAIGCEAIHPAWPWVTPEYVEAAHAAGLKVNCWTVNDPLALALMQNAGVDGIMTDYPERLRNG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=94, Percent_Identity=44.6808510638298, Blast_Score=81, Evalue=8e-16,
Organism=Escherichia coli, GI1789858, Length=230, Percent_Identity=31.304347826087, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17542344, Length=274, Percent_Identity=28.8321167883212, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17561436, Length=250, Percent_Identity=22, Blast_Score=74, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6325050, Length=258, Percent_Identity=26.3565891472868, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 25671; Mature: 25540

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQVIGHRGAAGTHPENTMVSFRRAFELGVDGIEFDVHRTADGHLVVIHDPAVDRTTDGS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
GLVMAMTLEQIRALDAGSWKDPRFAGERVPTLQELVRATPPGVRLYLELKAGSVHYPGIE
CEEEEEEHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCCEECCCHH
QELVDLLKAEGVLDRTQVSSFDHRALVKLKEICPELPLGMLTSSNLVDPVGMAKAIGCEA
HHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC
IHPAWPWVTPEYVEAAHAAGLKVNCWTVNDPLALALMQNAGVDGIMTDYPERLRNG
CCCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
PQVIGHRGAAGTHPENTMVSFRRAFELGVDGIEFDVHRTADGHLVVIHDPAVDRTTDGS
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
GLVMAMTLEQIRALDAGSWKDPRFAGERVPTLQELVRATPPGVRLYLELKAGSVHYPGIE
CEEEEEEHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCCEECCCHH
QELVDLLKAEGVLDRTQVSSFDHRALVKLKEICPELPLGMLTSSNLVDPVGMAKAIGCEA
HHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC
IHPAWPWVTPEYVEAAHAAGLKVNCWTVNDPLALALMQNAGVDGIMTDYPERLRNG
CCCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]