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The map label for this gene is secD [H]

Identifier: 51893581

GI number: 51893581

Start: 2630963

End: 2632213

Strand: Reverse

Name: secD [H]

Synonym: STH2443

Alternate gene names: 51893581

Gene position: 2632213-2630963 (Counterclockwise)

Preceding gene: 51893582

Following gene: 51893580

Centisome position: 73.81

GC content: 67.39

Gene sequence:

>1251_bases
ATGAGAGGCGGCTGGAACGCGCTGGTTCTGGCCCTGATTCTGGTGGTGGTCGGCGGCGTCATCGGGTTCTACCTGACGCC
GCACCCGCAGACCGGCTCGGCCAGGATCCTGCAGCACATGAAGCTCGGCTTGGACCTGCAGGGCGGCGCGCACATCGTGC
TGGAGGGCGTGGAATCTGAGCTGGGCCCGGTGACGCCGGACACGATCCAGGCGGCCCGGCAGGTCATCGAAAACCGGATC
AACGCCCTGGGCGTCTCCGAGCCGATCGTGCAGGTGGACGGCCAGAACCGGATCATCGTCGAGATCGCGGGTGCGACGGA
CATCGACCAGGCGCGGGAGGTCATCGGCAAGACCGCGGTGCTGAAGTTCATCGACCCCGAAGGGAACGAGGTGCTGACGG
GCAACGACGTGGAGAAGGCGGGCGTGGCCCAGAACCCGTCGGGCAGCGGCTTCATCGTGACCCTGAAGCTGAAGGGCGAG
GGGCCGGACAAGTTCTACGAGGCCACCCGCAAGTACGTGGGGAAGCCGATCTTCATCCTGCTGGACGATGAGATCATCTC
GGCGCCGATGGTCCAGGAGCCCATCCCGGGCGGCGAGGCCACCATCACCGGCAACTTCACCGTGGAGGAGGCCGGCACGC
TGGCCAACCTGATCAACGGCGGCGCGCTGCCCGTCAAGCTGGTGGAGGTGGAGGCCCGCATGGTCAGCGCCACCCTGGGC
GCGGACTCGGTCGCCAAGTCGCTCCGGGCGGGCTGGATCGGCATCGTCGGCGTGCTGCTGTTCATGATCCTGCTCTACCG
CATCCCGGGCCTGCTGGCCGACATCGCCCTGGGGGTCTACGCGATCCTGAACATGGTCGTCCTGCTGGCCATCGACGCCG
TGTTCACCCTCCCGGGCATCGCCGGCCTCCTGCTGGGCATTGCCATGGCGGTGGACGGCAACGTCATCATCTTCGAGCGC
ATCAAGGAGGAGCTGCGCAAGGGCAAGGGGCTGCGCTCCGGCATCGACGCCGGCTTCCACCGGGCGTACGTCACGGTGCT
GGACTCCCAGATCACCACGGCCATCGCGGCGGCGATCCTCTGGTACCTGGGCACCGGCCCGGTGCGGGGCTTCGCGGTCA
CGCTCTTCGTCGGCACCGTGCTCTCCATCTTCACGGCCATCACCTTCACCCGCTGGCTGGTCAAGCTCGCGGTGGACACC
GGCTGGTTCAACAAGCGGACGCTGTTCGGCGTGAAGGAGGTGGCCAACTAG

Upstream 100 bases:

>100_bases
GAACGGTTGAAATAGGGGGATATTGCTGAGGGCGGGCGGAGGCGAAGCCTCCATTTTGCTTTGCGACGCACTTGTATTCC
AACGTTAAGGAGGACAGGCC

Downstream 100 bases:

>100_bases
ATGGGCCTTACCCGCATCCGCTACATGCGCTATGCCCGCCACTACCTCATCTTCACCCTGGTGACCGTGCTGCTGGCCGC
CGGCGCGCTGCTCTTCCGGG

Product: protein translocase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRGGWNALVLALILVVVGGVIGFYLTPHPQTGSARILQHMKLGLDLQGGAHIVLEGVESELGPVTPDTIQAARQVIENRI
NALGVSEPIVQVDGQNRIIVEIAGATDIDQAREVIGKTAVLKFIDPEGNEVLTGNDVEKAGVAQNPSGSGFIVTLKLKGE
GPDKFYEATRKYVGKPIFILLDDEIISAPMVQEPIPGGEATITGNFTVEEAGTLANLINGGALPVKLVEVEARMVSATLG
ADSVAKSLRAGWIGIVGVLLFMILLYRIPGLLADIALGVYAILNMVVLLAIDAVFTLPGIAGLLLGIAMAVDGNVIIFER
IKEELRKGKGLRSGIDAGFHRAYVTVLDSQITTAIAAAILWYLGTGPVRGFAVTLFVGTVLSIFTAITFTRWLVKLAVDT
GWFNKRTLFGVKEVAN

Sequences:

>Translated_416_residues
MRGGWNALVLALILVVVGGVIGFYLTPHPQTGSARILQHMKLGLDLQGGAHIVLEGVESELGPVTPDTIQAARQVIENRI
NALGVSEPIVQVDGQNRIIVEIAGATDIDQAREVIGKTAVLKFIDPEGNEVLTGNDVEKAGVAQNPSGSGFIVTLKLKGE
GPDKFYEATRKYVGKPIFILLDDEIISAPMVQEPIPGGEATITGNFTVEEAGTLANLINGGALPVKLVEVEARMVSATLG
ADSVAKSLRAGWIGIVGVLLFMILLYRIPGLLADIALGVYAILNMVVLLAIDAVFTLPGIAGLLLGIAMAVDGNVIIFER
IKEELRKGKGLRSGIDAGFHRAYVTVLDSQITTAIAAAILWYLGTGPVRGFAVTLFVGTVLSIFTAITFTRWLVKLAVDT
GWFNKRTLFGVKEVAN
>Mature_416_residues
MRGGWNALVLALILVVVGGVIGFYLTPHPQTGSARILQHMKLGLDLQGGAHIVLEGVESELGPVTPDTIQAARQVIENRI
NALGVSEPIVQVDGQNRIIVEIAGATDIDQAREVIGKTAVLKFIDPEGNEVLTGNDVEKAGVAQNPSGSGFIVTLKLKGE
GPDKFYEATRKYVGKPIFILLDDEIISAPMVQEPIPGGEATITGNFTVEEAGTLANLINGGALPVKLVEVEARMVSATLG
ADSVAKSLRAGWIGIVGVLLFMILLYRIPGLLADIALGVYAILNMVVLLAIDAVFTLPGIAGLLLGIAMAVDGNVIIFER
IKEELRKGKGLRSGIDAGFHRAYVTVLDSQITTAIAAAILWYLGTGPVRGFAVTLFVGTVLSIFTAITFTRWLVKLAVDT
GWFNKRTLFGVKEVAN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=414, Percent_Identity=31.8840579710145, Blast_Score=183, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 44108; Mature: 44108

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGGWNALVLALILVVVGGVIGFYLTPHPQTGSARILQHMKLGLDLQGGAHIVLEGVESE
CCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCEECCCCEEEEECCHHH
LGPVTPDTIQAARQVIENRINALGVSEPIVQVDGQNRIIVEIAGATDIDQAREVIGKTAV
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHE
LKFIDPEGNEVLTGNDVEKAGVAQNPSGSGFIVTLKLKGEGPDKFYEATRKYVGKPIFIL
EEEECCCCCEEECCCCCHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEE
LDDEIISAPMVQEPIPGGEATITGNFTVEEAGTLANLINGGALPVKLVEVEARMVSATLG
ECCHHHCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCC
ADSVAKSLRAGWIGIVGVLLFMILLYRIPGLLADIALGVYAILNMVVLLAIDAVFTLPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLLLGIAMAVDGNVIIFERIKEELRKGKGLRSGIDAGFHRAYVTVLDSQITTAIAAAIL
HHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYLGTGPVRGFAVTLFVGTVLSIFTAITFTRWLVKLAVDTGWFNKRTLFGVKEVAN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRGGWNALVLALILVVVGGVIGFYLTPHPQTGSARILQHMKLGLDLQGGAHIVLEGVESE
CCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCEECCCCEEEEECCHHH
LGPVTPDTIQAARQVIENRINALGVSEPIVQVDGQNRIIVEIAGATDIDQAREVIGKTAV
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHE
LKFIDPEGNEVLTGNDVEKAGVAQNPSGSGFIVTLKLKGEGPDKFYEATRKYVGKPIFIL
EEEECCCCCEEECCCCCHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEE
LDDEIISAPMVQEPIPGGEATITGNFTVEEAGTLANLINGGALPVKLVEVEARMVSATLG
ECCHHHCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCC
ADSVAKSLRAGWIGIVGVLLFMILLYRIPGLLADIALGVYAILNMVVLLAIDAVFTLPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLLLGIAMAVDGNVIIFERIKEELRKGKGLRSGIDAGFHRAYVTVLDSQITTAIAAAIL
HHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYLGTGPVRGFAVTLFVGTVLSIFTAITFTRWLVKLAVDTGWFNKRTLFGVKEVAN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]