| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893502
Identifier: 51893502
GI number: 51893502
Start: 2554411
End: 2555640
Strand: Reverse
Name: 51893502
Synonym: STH2364
Alternate gene names: NA
Gene position: 2555640-2554411 (Counterclockwise)
Preceding gene: 51893504
Following gene: 51893501
Centisome position: 71.66
GC content: 72.93
Gene sequence:
>1230_bases ATGGTCGGCGCAGGCTACACGTCTTTCCGTAAACGGAAAAGCCCCTTGCCGGTAGGCAGGGGGCTGTTTGCATTTGCCCG GGTGCAGGCGCCGCCCGGCGGCGGTACATGCCCGACGAGGGAGGAACGGTCTGAAATGCGCGACGCGAGATGCGTGCAGT GTGAACGGTACGCGCAGAACCAATGGCTGGGGCGGGAGAGGCGCACCGGCGGCGTGGTGGAGCTGGCGCGCCACCTGGTC GGGATCCAGAGCCAGCTCCGCACCACGCCGGACCTGGCCGCCAGGGCCAGGCTCGCCGGCGCCCGCCCGGGGGACGTCCG GCGCGAGCTGGAGGAGACGCGGCGGCTGGTGCGGACCTGGACGGTGCGGGGGACCCTGCACGTTGTGGCTGCGGAGGACC TGCCGCTGCTCTGGCGGGCGCTGCGGCCCGAGTGGGAGTCCCGCTGGAGCAAGTACCTGGACAAGCACGTCACCCGTGTG CAGCGGGAGGCGGCCGCGGCGGCCTGCCTGCAGATCCTCGCGCGGGGGCCTGCCACCCGGGCGGAGTTGCTGGAGGGCGC GCAGCAGATCCTGGGATGCCGGGACGAGTGGGTGGCGTATCTCTTCTCTTCGTGGGGAGGGGTGCTGAAGGACCTGGCGT ACGCCGGCCGGGTGGTGTACGGCCCCGAGCGGGATGGGGAGGTTCAGTTCGTGCGGACCGAGGACTGGCTGGACCTGCCG GTCGCGGACATGGATCCGGACGACGCCCTGGCGGTGCTGCTGGAGCGGTACCTGCGGGCGTACAGCCCCGCCCGGATTCA GGACTTCGCCCACTGGAGCGGCGTCTCGGTGCGGCGCGCCCGGGAGGCCCTGACCCGGCTGGGCGGCCGGGTGGCGGTGC GGGACGGCTGGCTGGTCCCGGAAGGGGAGGGCGGCGGTTCCTGTGCCCCGGACCGGCAGGCCGGTGGTCCTGGTGCGGAC GCGGGTTGCGTGCGCCTGTTGCCCAAGTTCGACCCCTTCCTCCTGGCCCACGCCGACAAATTCTACCTGGACGAGGACCA CTACAAGGCGGTCTTCCGGGCCGCGGCGGACGTGGCCGCGGTGATCCTGAGCGGCGGTCGCGTCATCGGGACCTGGCGGG CGGAGGGCTCGCGGGTGGTCCCGGCGTTGTTCGGGCCCGTCGATGACGCGGCGGCCGCCGAGCTGGCGCAGGAGGTGGAG GCGGTCTCGGCCTGGCTCCGGCAGGGGTGA
Upstream 100 bases:
>100_bases GAAGCGGGGCGATCAAGACTAGACTGCAAATTATCCGTAGGGTAAGCTATTATCATGAGGGCGGGACCCTAGGGGGCCCA GCTTTGCTACTGGTTGCAGC
Downstream 100 bases:
>100_bases CGGCCATCGTCGACGCGCGATCGCTGCCGTTCACCTGCTGGCGATGGCCCGGAAGGGCCCGCTTCGGGTGCCGATTCTTC CATCCTGGGGGGAGAACCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MVGAGYTSFRKRKSPLPVGRGLFAFARVQAPPGGGTCPTREERSEMRDARCVQCERYAQNQWLGRERRTGGVVELARHLV GIQSQLRTTPDLAARARLAGARPGDVRRELEETRRLVRTWTVRGTLHVVAAEDLPLLWRALRPEWESRWSKYLDKHVTRV QREAAAAACLQILARGPATRAELLEGAQQILGCRDEWVAYLFSSWGGVLKDLAYAGRVVYGPERDGEVQFVRTEDWLDLP VADMDPDDALAVLLERYLRAYSPARIQDFAHWSGVSVRRAREALTRLGGRVAVRDGWLVPEGEGGGSCAPDRQAGGPGAD AGCVRLLPKFDPFLLAHADKFYLDEDHYKAVFRAAADVAAVILSGGRVIGTWRAEGSRVVPALFGPVDDAAAAELAQEVE AVSAWLRQG
Sequences:
>Translated_409_residues MVGAGYTSFRKRKSPLPVGRGLFAFARVQAPPGGGTCPTREERSEMRDARCVQCERYAQNQWLGRERRTGGVVELARHLV GIQSQLRTTPDLAARARLAGARPGDVRRELEETRRLVRTWTVRGTLHVVAAEDLPLLWRALRPEWESRWSKYLDKHVTRV QREAAAAACLQILARGPATRAELLEGAQQILGCRDEWVAYLFSSWGGVLKDLAYAGRVVYGPERDGEVQFVRTEDWLDLP VADMDPDDALAVLLERYLRAYSPARIQDFAHWSGVSVRRAREALTRLGGRVAVRDGWLVPEGEGGGSCAPDRQAGGPGAD AGCVRLLPKFDPFLLAHADKFYLDEDHYKAVFRAAADVAAVILSGGRVIGTWRAEGSRVVPALFGPVDDAAAAELAQEVE AVSAWLRQG >Mature_409_residues MVGAGYTSFRKRKSPLPVGRGLFAFARVQAPPGGGTCPTREERSEMRDARCVQCERYAQNQWLGRERRTGGVVELARHLV GIQSQLRTTPDLAARARLAGARPGDVRRELEETRRLVRTWTVRGTLHVVAAEDLPLLWRALRPEWESRWSKYLDKHVTRV QREAAAAACLQILARGPATRAELLEGAQQILGCRDEWVAYLFSSWGGVLKDLAYAGRVVYGPERDGEVQFVRTEDWLDLP VADMDPDDALAVLLERYLRAYSPARIQDFAHWSGVSVRRAREALTRLGGRVAVRDGWLVPEGEGGGSCAPDRQAGGPGAD AGCVRLLPKFDPFLLAHADKFYLDEDHYKAVFRAAADVAAVILSGGRVIGTWRAEGSRVVPALFGPVDDAAAAELAQEVE AVSAWLRQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45101; Mature: 45101
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGAGYTSFRKRKSPLPVGRGLFAFARVQAPPGGGTCPTREERSEMRDARCVQCERYAQN CCCCCCHHHHHCCCCCCCCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QWLGRERRTGGVVELARHLVGIQSQLRTTPDLAARARLAGARPGDVRRELEETRRLVRTW HHCCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH TVRGTLHVVAAEDLPLLWRALRPEWESRWSKYLDKHVTRVQREAAAAACLQILARGPATR EECCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AELLEGAQQILGCRDEWVAYLFSSWGGVLKDLAYAGRVVYGPERDGEVQFVRTEDWLDLP HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCC VADMDPDDALAVLLERYLRAYSPARIQDFAHWSGVSVRRAREALTRLGGRVAVRDGWLVP CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEE EGEGGGSCAPDRQAGGPGADAGCVRLLPKFDPFLLAHADKFYLDEDHYKAVFRAAADVAA CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCHHCCCCHHHHHHHHHHHHHHH VILSGGRVIGTWRAEGSRVVPALFGPVDDAAAAELAQEVEAVSAWLRQG HHHCCCEEEEEEECCCCEECHHHHCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVGAGYTSFRKRKSPLPVGRGLFAFARVQAPPGGGTCPTREERSEMRDARCVQCERYAQN CCCCCCHHHHHCCCCCCCCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QWLGRERRTGGVVELARHLVGIQSQLRTTPDLAARARLAGARPGDVRRELEETRRLVRTW HHCCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH TVRGTLHVVAAEDLPLLWRALRPEWESRWSKYLDKHVTRVQREAAAAACLQILARGPATR EECCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AELLEGAQQILGCRDEWVAYLFSSWGGVLKDLAYAGRVVYGPERDGEVQFVRTEDWLDLP HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCC VADMDPDDALAVLLERYLRAYSPARIQDFAHWSGVSVRRAREALTRLGGRVAVRDGWLVP CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEE EGEGGGSCAPDRQAGGPGADAGCVRLLPKFDPFLLAHADKFYLDEDHYKAVFRAAADVAA CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCHHCCCCHHHHHHHHHHHHHHH VILSGGRVIGTWRAEGSRVVPALFGPVDDAAAAELAQEVEAVSAWLRQG HHHCCCEEEEEEECCCCEECHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA