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The map label for this gene is alsC [H]

Identifier: 51893478

GI number: 51893478

Start: 2527192

End: 2528187

Strand: Reverse

Name: alsC [H]

Synonym: STH2340

Alternate gene names: 51893478

Gene position: 2528187-2527192 (Counterclockwise)

Preceding gene: 51893479

Following gene: 51893477

Centisome position: 70.89

GC content: 65.16

Gene sequence:

>996_bases
GTGGAGGGAACTGAATTGGCCAAGGACATCGCGGTGAAGAAGCGTCTTTCGTTCAGCGATGTATGGGACAAGTACAGCAC
TGTCCTGATTCTCATCCTCATGATCCTCGTGTTTGGCGCTCTGGAGCCCGTGGCCTTCCTCGGGGGCAGCAATCTGATCA
AGATCGTGGAGCAGAGCGCGATCACCATCCTCCTGGCCTGCGGCGAGTTCTTCGCCATCCTGCTGGCCGGCATCGACCTG
TCGGTCAGCTCGACCATGGCCCTGACCGGCGTGGTGACCGCCAAGCTGCTGGTTGCGGGCGTGCACCCCTTCCTGGCCGT
GGTCCTGGGCGCCATCCTGCTGGGCGGGCTGATCGGCGCCCTCAACGGCGGGCTGATCAACGCCACCGGCCTTCCCCCCT
TCATCATCACCCTCGGCACCCAGGCCATCCTGCGGGGGCTCACGCTGACCGTCTCCTCCGCCAGAGCCGTATCGGGGGTT
CCGGTCACGTTCACCAAGGCGATGGGCGGCAAGCTGTTCGGCGTGGTGCCGACCCCGATCCTCATCGCACTGATCACCGC
CCTGGTGCTGACATTCTTCACGAAAAAGACCCAGGCCGGGCGCAACCTGTACGCCATCGGCGGCAACGCTCAGTCGGCCT
GGTTTGCCGGCATCAATGTGAAGCGGCACACCCTGCTGGCCTTCACCATCGCCGGCATCTGCGCCGGCCTCGCGGGGATG
GTCAACATCGCCCGTCTCGGGGCGGCCGAGCCCAACGCCGGCACGGGCTATGAGACCTTCGCCATCGCGGCTGCCATCAT
CGGCGGGACCAGCTTCTTCGGCGGCGTCGGCGTCGTGCCGAAGGTGGTGGTCGGCGGTCTGATCATCGGCGTCATCAACA
ACGGCCTGAACATGGTGGGCGTCTCCTCCTACTACCAGCAGATCGCCATGGGCGCCCTGATCATCGTCGCCGTCACCCTG
GACCGCTTCTTCGGCGCGAGCCGCAAGCGTGGATAA

Upstream 100 bases:

>100_bases
ATTATCGTCATGAGCGAGGGCCGGATCAGCGCGGAGTTCACGGCCGCGGAAGCGACCGAGGAAAAGATTGTGAAGGCGGC
CACCGTCGGCGCCGGAGCGA

Downstream 100 bases:

>100_bases
GCGTGCGGCCGGCCCGCACGACGAGGAGGTCATCGACTTGTACGACGACGTCGTCCTGGGCATCGACCTGGGTGGCACTC
ACCTGCGGTTGGGGCTCGTG

Product: D-allose transporter subunit

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MEGTELAKDIAVKKRLSFSDVWDKYSTVLILILMILVFGALEPVAFLGGSNLIKIVEQSAITILLACGEFFAILLAGIDL
SVSSTMALTGVVTAKLLVAGVHPFLAVVLGAILLGGLIGALNGGLINATGLPPFIITLGTQAILRGLTLTVSSARAVSGV
PVTFTKAMGGKLFGVVPTPILIALITALVLTFFTKKTQAGRNLYAIGGNAQSAWFAGINVKRHTLLAFTIAGICAGLAGM
VNIARLGAAEPNAGTGYETFAIAAAIIGGTSFFGGVGVVPKVVVGGLIIGVINNGLNMVGVSSYYQQIAMGALIIVAVTL
DRFFGASRKRG

Sequences:

>Translated_331_residues
MEGTELAKDIAVKKRLSFSDVWDKYSTVLILILMILVFGALEPVAFLGGSNLIKIVEQSAITILLACGEFFAILLAGIDL
SVSSTMALTGVVTAKLLVAGVHPFLAVVLGAILLGGLIGALNGGLINATGLPPFIITLGTQAILRGLTLTVSSARAVSGV
PVTFTKAMGGKLFGVVPTPILIALITALVLTFFTKKTQAGRNLYAIGGNAQSAWFAGINVKRHTLLAFTIAGICAGLAGM
VNIARLGAAEPNAGTGYETFAIAAAIIGGTSFFGGVGVVPKVVVGGLIIGVINNGLNMVGVSSYYQQIAMGALIIVAVTL
DRFFGASRKRG
>Mature_331_residues
MEGTELAKDIAVKKRLSFSDVWDKYSTVLILILMILVFGALEPVAFLGGSNLIKIVEQSAITILLACGEFFAILLAGIDL
SVSSTMALTGVVTAKLLVAGVHPFLAVVLGAILLGGLIGALNGGLINATGLPPFIITLGTQAILRGLTLTVSSARAVSGV
PVTFTKAMGGKLFGVVPTPILIALITALVLTFFTKKTQAGRNLYAIGGNAQSAWFAGINVKRHTLLAFTIAGICAGLAGM
VNIARLGAAEPNAGTGYETFAIAAAIIGGTSFFGGVGVVPKVVVGGLIIGVINNGLNMVGVSSYYQQIAMGALIIVAVTL
DRFFGASRKRG

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=55.1724137931034, Blast_Score=332, Evalue=3e-92,
Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=38.006230529595, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI145693152, Length=321, Percent_Identity=30.5295950155763, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788896, Length=312, Percent_Identity=34.2948717948718, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1789992, Length=361, Percent_Identity=31.8559556786704, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87082395, Length=277, Percent_Identity=36.8231046931408, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788471, Length=322, Percent_Identity=36.9565217391304, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787794, Length=296, Percent_Identity=31.0810810810811, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693214, Length=257, Percent_Identity=35.408560311284, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=276, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33891; Mature: 33891

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGTELAKDIAVKKRLSFSDVWDKYSTVLILILMILVFGALEPVAFLGGSNLIKIVEQSA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHH
ITILLACGEFFAILLAGIDLSVSSTMALTGVVTAKLLVAGVHPFLAVVLGAILLGGLIGA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNGGLINATGLPPFIITLGTQAILRGLTLTVSSARAVSGVPVTFTKAMGGKLFGVVPTPI
HCCCEEECCCCCHHHHHHHHHHHHHHHHHEEECCHHCCCCCEEEHHHCCCCEEECCHHHH
LIALITALVLTFFTKKTQAGRNLYAIGGNAQSAWFAGINVKRHTLLAFTIAGICAGLAGM
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
VNIARLGAAEPNAGTGYETFAIAAAIIGGTSFFGGVGVVPKVVVGGLIIGVINNGLNMVG
HHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE
VSSYYQQIAMGALIIVAVTLDRFFGASRKRG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEGTELAKDIAVKKRLSFSDVWDKYSTVLILILMILVFGALEPVAFLGGSNLIKIVEQSA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHH
ITILLACGEFFAILLAGIDLSVSSTMALTGVVTAKLLVAGVHPFLAVVLGAILLGGLIGA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNGGLINATGLPPFIITLGTQAILRGLTLTVSSARAVSGVPVTFTKAMGGKLFGVVPTPI
HCCCEEECCCCCHHHHHHHHHHHHHHHHHEEECCHHCCCCCEEEHHHCCCCEEECCHHHH
LIALITALVLTFFTKKTQAGRNLYAIGGNAQSAWFAGINVKRHTLLAFTIAGICAGLAGM
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
VNIARLGAAEPNAGTGYETFAIAAAIIGGTSFFGGVGVVPKVVVGGLIIGVINNGLNMVG
HHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE
VSSYYQQIAMGALIIVAVTLDRFFGASRKRG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503; 7610040; 9401019 [H]