Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 51893451

GI number: 51893451

Start: 2498075

End: 2499121

Strand: Reverse

Name: dppC [H]

Synonym: STH2313

Alternate gene names: 51893451

Gene position: 2499121-2498075 (Counterclockwise)

Preceding gene: 51893452

Following gene: 51893450

Centisome position: 70.08

GC content: 73.35

Gene sequence:

>1047_bases
ATGGCCGTCATCGATCCGCGCACGCCAGCCGTAGGCGGCCCGCCGAGCCCGGCGCAGGGCGCGCCGCCTGTGGCTCCAGG
CGTCATGATGCAGGGGGCCCAGGCGCATCCGGCCCAGGTGGGGCCGCTGGAAGGGGCGCAGCCACCGCCGGCTGCGGGCC
ACCCGGGACGGGGCGTGTTGCCGCCTCCGGGGGGCGATCCCGTCATGAGCGGGCGGTCGCCGGGGATCCTCCGCCGGCTG
CTCCGCCACCGGGCGGCGGTGCTCGGCGGCACGATCGTGCTGCTCATCGTGCTCATGGCGCTGCTGGCCGACGTCATCGC
CCCCTACGACCCGATCCGGGGCAGGCTCTCCGACATGCTCCAGCCGCCGTCCCGGGCGCACTGGATGGGCACCGACGAGC
AGGGGCGGGACATCCTCAGCCGCATCATCCACGGCAGCCGCATCTCGCTCCAGGTGGGGCTGGTGGCGGTGGGCATCTCG
CTGACGACGGGTACGATCATCGGCGCCGTGTCCGCCTACTTCGGCGGCTGGCTCGACCTGCTGATCATGCGGGTCATCGA
CATCCTGCTCGCCTTCCCTTCGATCCTGCTGGCCATCGCCATCACCGCGATCCTGGGGCCGAGCCTGACCAACGCGATGG
TCGCCGTGGGCATCGTGGGCATGCCGGTCTACGCCCGGCTGGTGCGGGCGTCGGTGCTTTCGCTGAAGGAGCAGGACTTC
GTCCAGGCCGCCCGGGCGGCCGGCGGCGGCCACGGGCGCATCCTCTGGCGGCACATCCTCCCCAACGCCCTGGCCCCGCT
CATCGTCCAGTCCACGCTCTCGATCGGCACGGCGATGCTGGACGCCGCCGGCCTCTCCTTCCTGGGGCTCGGGGCCCAGC
CGCCGGCGCCGGAGTGGGGGGCGATGCTCTCGGGGGCGCAGGTCTACATCCAGCTGGCGCCGTGGGTCGTCACCTTCCCG
GGGCTGGCGATCATGCTGGCGGTGCTGGGCTTCAACCTCCTCGGCGACGGGCTGCGGGACGTGCTGGACCCGCGGCTCAG
GCGGTGA

Upstream 100 bases:

>100_bases
GCTGATCACCCTGGCGATGATTCTGGTCAACCTGCTGGTCGACGTCATCTACACGCTGATCGACCCGCGCATCCGCTACC
AGTAGGGAGGGGGCGACGAG

Downstream 100 bases:

>100_bases
ACGGAAACGAACGCCGCCTGAGCCGCGGCGTTCGCGTTTTGGCACGGCGAAGATGACAAAAGCGGTACGGCGGAAGGGCA
GGGGGCTGGTGCGTCAACTC

Product: oligopeptide ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAVIDPRTPAVGGPPSPAQGAPPVAPGVMMQGAQAHPAQVGPLEGAQPPPAAGHPGRGVLPPPGGDPVMSGRSPGILRRL
LRHRAAVLGGTIVLLIVLMALLADVIAPYDPIRGRLSDMLQPPSRAHWMGTDEQGRDILSRIIHGSRISLQVGLVAVGIS
LTTGTIIGAVSAYFGGWLDLLIMRVIDILLAFPSILLAIAITAILGPSLTNAMVAVGIVGMPVYARLVRASVLSLKEQDF
VQAARAAGGGHGRILWRHILPNALAPLIVQSTLSIGTAMLDAAGLSFLGLGAQPPAPEWGAMLSGAQVYIQLAPWVVTFP
GLAIMLAVLGFNLLGDGLRDVLDPRLRR

Sequences:

>Translated_348_residues
MAVIDPRTPAVGGPPSPAQGAPPVAPGVMMQGAQAHPAQVGPLEGAQPPPAAGHPGRGVLPPPGGDPVMSGRSPGILRRL
LRHRAAVLGGTIVLLIVLMALLADVIAPYDPIRGRLSDMLQPPSRAHWMGTDEQGRDILSRIIHGSRISLQVGLVAVGIS
LTTGTIIGAVSAYFGGWLDLLIMRVIDILLAFPSILLAIAITAILGPSLTNAMVAVGIVGMPVYARLVRASVLSLKEQDF
VQAARAAGGGHGRILWRHILPNALAPLIVQSTLSIGTAMLDAAGLSFLGLGAQPPAPEWGAMLSGAQVYIQLAPWVVTFP
GLAIMLAVLGFNLLGDGLRDVLDPRLRR
>Mature_347_residues
AVIDPRTPAVGGPPSPAQGAPPVAPGVMMQGAQAHPAQVGPLEGAQPPPAAGHPGRGVLPPPGGDPVMSGRSPGILRRLL
RHRAAVLGGTIVLLIVLMALLADVIAPYDPIRGRLSDMLQPPSRAHWMGTDEQGRDILSRIIHGSRISLQVGLVAVGISL
TTGTIIGAVSAYFGGWLDLLIMRVIDILLAFPSILLAIAITAILGPSLTNAMVAVGIVGMPVYARLVRASVLSLKEQDFV
QAARAAGGGHGRILWRHILPNALAPLIVQSTLSIGTAMLDAAGLSFLGLGAQPPAPEWGAMLSGAQVYIQLAPWVVTFPG
LAIMLAVLGFNLLGDGLRDVLDPRLRR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=271, Percent_Identity=49.4464944649446, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1787760, Length=259, Percent_Identity=47.1042471042471, Blast_Score=237, Evalue=9e-64,
Organism=Escherichia coli, GI1789964, Length=273, Percent_Identity=51.6483516483517, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=42.2594142259414, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1787498, Length=272, Percent_Identity=37.5, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787549, Length=285, Percent_Identity=37.5438596491228, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=32.5991189427313, Blast_Score=124, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36059; Mature: 35928

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIDPRTPAVGGPPSPAQGAPPVAPGVMMQGAQAHPAQVGPLEGAQPPPAAGHPGRGVL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPPGGDPVMSGRSPGILRRLLRHRAAVLGGTIVLLIVLMALLADVIAPYDPIRGRLSDML
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
QPPSRAHWMGTDEQGRDILSRIIHGSRISLQVGLVAVGISLTTGTIIGAVSAYFGGWLDL
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIMRVIDILLAFPSILLAIAITAILGPSLTNAMVAVGIVGMPVYARLVRASVLSLKEQDF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQAARAAGGGHGRILWRHILPNALAPLIVQSTLSIGTAMLDAAGLSFLGLGAQPPAPEWG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHH
AMLSGAQVYIQLAPWVVTFPGLAIMLAVLGFNLLGDGLRDVLDPRLRR
HHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVIDPRTPAVGGPPSPAQGAPPVAPGVMMQGAQAHPAQVGPLEGAQPPPAAGHPGRGVL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPPGGDPVMSGRSPGILRRLLRHRAAVLGGTIVLLIVLMALLADVIAPYDPIRGRLSDML
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
QPPSRAHWMGTDEQGRDILSRIIHGSRISLQVGLVAVGISLTTGTIIGAVSAYFGGWLDL
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIMRVIDILLAFPSILLAIAITAILGPSLTNAMVAVGIVGMPVYARLVRASVLSLKEQDF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQAARAAGGGHGRILWRHILPNALAPLIVQSTLSIGTAMLDAAGLSFLGLGAQPPAPEWG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHH
AMLSGAQVYIQLAPWVVTFPGLAIMLAVLGFNLLGDGLRDVLDPRLRR
HHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]