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The map label for this gene is rplY1

Identifier: 51893419

GI number: 51893419

Start: 2453484

End: 2454101

Strand: Reverse

Name: rplY1

Synonym: STH2281

Alternate gene names: 51893419

Gene position: 2454101-2453484 (Counterclockwise)

Preceding gene: 51893422

Following gene: 51893418

Centisome position: 68.82

GC content: 66.99

Gene sequence:

>618_bases
ATGAATGCAGTGTTGCAGTTGGAGGCCAGAACCCGGGAGACCGGTTCCCGGGCAAGCCGGCGGCTGCGGCAGGCCGGGTT
CGTACCGGGTATCATCTACGGTCCCGGTGTGGAGCCGCTGGCCATAAGCGTTCCCACCATCCAACTGGAGCGGTTGGTCG
ACCGGCACGGCCGCGGGCATCTCATCAACGCCCACGTGGAGGGGGAAGCCAATCCCCGGCAGGTGGTGATCAAACAGCTT
CAGCGGGACGTCCTGACCGCTCAGGTGACACACGTCGATTTCCTGCAAGTCGACATCCACCGGACCATCACCCTTACGGT
GCCCATCGCCGTTGTGGGGGAGGAGCAGGCGAAGCGCCGGGGTCTGATCGTGACCCACGAGCTGGCCGAGGTGGAGATCA
AGTGCCGGCCCACGGAGATTCCGGAGGCGATTACGCTGGACATCTCCGGCGTGACCGAGCCCGGGCCCGTGACGGTGGCC
AGCCTTGCCGCTCCTCCCGGCGTCGAGGTGCTGGAGGATCCCGACACCGTCGTCCTCTCCTGCACCCTGGGTTTCGGGGG
CGTCGAGGAGGCAGAAGCGGAAGCGGAAGCCGGGAGCTCCACCGGTCCGGCGGCGTGA

Upstream 100 bases:

>100_bases
TATGCTTCCCAGAGTGTTGCGGGAAGCGGTATTTTATATATAGGGGGTGTTCCGGGTGGCCGGAGCACCTGCCAGACTTT
CTTGACAGGGGGGATCGTCG

Downstream 100 bases:

>100_bases
GCGGCATAGAAATGTACCGGGGCACCCCCTGGACGGGAGTGCCCCGGTTTTTCGGTGTGCCCGGCATGGGCGCTGACTTG
GCGGTGAAAGTCCGCTACGG

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC 1

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNAVLQLEARTRETGSRASRRLRQAGFVPGIIYGPGVEPLAISVPTIQLERLVDRHGRGHLINAHVEGEANPRQVVIKQL
QRDVLTAQVTHVDFLQVDIHRTITLTVPIAVVGEEQAKRRGLIVTHELAEVEIKCRPTEIPEAITLDISGVTEPGPVTVA
SLAAPPGVEVLEDPDTVVLSCTLGFGGVEEAEAEAEAGSSTGPAA

Sequences:

>Translated_205_residues
MNAVLQLEARTRETGSRASRRLRQAGFVPGIIYGPGVEPLAISVPTIQLERLVDRHGRGHLINAHVEGEANPRQVVIKQL
QRDVLTAQVTHVDFLQVDIHRTITLTVPIAVVGEEQAKRRGLIVTHELAEVEIKCRPTEIPEAITLDISGVTEPGPVTVA
SLAAPPGVEVLEDPDTVVLSCTLGFGGVEEAEAEAEAGSSTGPAA
>Mature_205_residues
MNAVLQLEARTRETGSRASRRLRQAGFVPGIIYGPGVEPLAISVPTIQLERLVDRHGRGHLINAHVEGEANPRQVVIKQL
QRDVLTAQVTHVDFLQVDIHRTITLTVPIAVVGEEQAKRRGLIVTHELAEVEIKCRPTEIPEAITLDISGVTEPGPVTVA
SLAAPPGVEVLEDPDTVVLSCTLGFGGVEEAEAEAEAGSSTGPAA

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL251_SYMTH (Q67M29)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_076110.1
- ProteinModelPortal:   Q67M29
- SMR:   Q67M29
- GeneID:   2979222
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH2281
- NMPDR:   fig|292459.1.peg.2189
- HOGENOM:   HBG731986
- OMA:   NDKKINC
- ProtClustDB:   PRK05618
- BioCyc:   STHE292459:STH2281-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21816; Mature: 21816

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVLQLEARTRETGSRASRRLRQAGFVPGIIYGPGVEPLAISVPTIQLERLVDRHGRGH
CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEECCHHHHHHHHHHCCCCC
LINAHVEGEANPRQVVIKQLQRDVLTAQVTHVDFLQVDIHRTITLTVPIAVVGEEQAKRR
EEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEEEEEEEECCHHHHHC
GLIVTHELAEVEIKCRPTEIPEAITLDISGVTEPGPVTVASLAAPPGVEVLEDPDTVVLS
CEEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEECCCCEEEEE
CTLGFGGVEEAEAEAEAGSSTGPAA
EEECCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNAVLQLEARTRETGSRASRRLRQAGFVPGIIYGPGVEPLAISVPTIQLERLVDRHGRGH
CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEECCHHHHHHHHHHCCCCC
LINAHVEGEANPRQVVIKQLQRDVLTAQVTHVDFLQVDIHRTITLTVPIAVVGEEQAKRR
EEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEEEEEEEECCHHHHHC
GLIVTHELAEVEIKCRPTEIPEAITLDISGVTEPGPVTVASLAAPPGVEVLEDPDTVVLS
CEEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEECCCCEEEEE
CTLGFGGVEEAEAEAEAGSSTGPAA
EEECCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA