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The map label for this gene is ykfC [H]

Identifier: 51893418

GI number: 51893418

Start: 2452127

End: 2452873

Strand: Reverse

Name: ykfC [H]

Synonym: STH2280

Alternate gene names: 51893418

Gene position: 2452873-2452127 (Counterclockwise)

Preceding gene: 51893419

Following gene: 51893417

Centisome position: 68.78

GC content: 64.26

Gene sequence:

>747_bases
ATGGAGCAGGTGGTGGCCAGGGAGAACATGCTGGCCGCCCTGAAACGGGTGGAGCGGAACGGAGGCGCTCCCGGCGTGGA
CGGTGTCCCCACCGAACGGCTGCGGGACCAGATTCGCGTGGAGTGGGAGCGCATCCGTGAGGAACTGCTCCGGGGGACCT
ACAGACCGCAGCCAGTCCGCCGGGTCGAAATCCCGAAACCGGGCGGCGGCAAGCGGATGTTGGGTATTCCCACCGTGATG
GACCGCCTGATCCAGCAGGCACTCCTGCAAGTACTGACGCCGATCTTTGACCCGACATTCTCCGAATCCAGCTACGGCTT
CCGGCCGGGGCGGCGGGGTCATGACGCGGTCAGGAAGGCACGTCAGTACGTGGAGGAAGGGTACGACTGGGTCGTGGACA
TGGACCTGGAGAAGTTCTTCGACCGGGTCAACCACGACGTGCTGATGGCCCGCGTGGCACGGCGGGTAACGGACAAGCGA
GTGCTGCGGCTGATCCGGGGCGTTGTCCCGGAAATCGTGGAAATTCAAAGTGGCGGCCCTCAAGCCCCGTTTGGTATAAC
GGGGGTGGACAGTAGGAAGGAGGTTGCCGCCACTGATGTCATTGTACCGCGGGAAGACCAAGAAGCGCCAGTTGCTGGAG
GTGGACAAACAGCCCTGGTTGCCCCAGCAGGTGCAGGTGACGCTGCATGCCCTCATGGGAGCAGCCAAGGAGGGTCTGCT
GGCCCTGGCCGTCGCTGTGGGGCTTGA

Upstream 100 bases:

>100_bases
CTCGCCGGAGGTAGCGGTGAAGCCGCAAGGGACGGCGAGAGGGCGGAGTGGGCAGCCGGCACAAGACGGAACGTCACCCC
GCGGGGAGCACAGCAACCTG

Downstream 100 bases:

>100_bases
CGTACTGCGCTCCATGATGGAGGCAGAGGTGACGGCCATCGTCGGCCCCAAGGGCAAGCACAACCCCAATCGAAAGGCTT
TTCGGCACGGTGCCGAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWERIREELLRGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRGVVPEIVEIQSGGPQAPFGITGVDSRKEVAATDVIVPREDQEAPVAGGGQTALVAPAGAGDAACPHGSSQGGSA
GPGRRCGA

Sequences:

>Translated_248_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWERIREELLRGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRGVVPEIVEIQSGGPQAPFGITGVDSRKEVAATDVIVPREDQEAPVAGGGQTALVAPAGAGDAACPHGSSQGGSA
GPGRRCGA
>Mature_248_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWERIREELLRGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRGVVPEIVEIQSGGPQAPFGITGVDSRKEVAATDVIVPREDQEAPVAGGGQTALVAPAGAGDAACPHGSSQGGSA
GPGRRCGA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=122, Percent_Identity=32.7868852459016, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6226521, Length=131, Percent_Identity=29.7709923664122, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 27135; Mature: 27135

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWERIREELLRGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRGVVPEIVEIQSGGP
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QAPFGITGVDSRKEVAATDVIVPREDQEAPVAGGGQTALVAPAGAGDAACPHGSSQGGSA
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
GPGRRCGA
CCCCCCCC
>Mature Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWERIREELLRGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRGVVPEIVEIQSGGP
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QAPFGITGVDSRKEVAATDVIVPREDQEAPVAGGGQTALVAPAGAGDAACPHGSSQGGSA
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
GPGRRCGA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]