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The map label for this gene is ycdC [C]

Identifier: 51893393

GI number: 51893393

Start: 2421906

End: 2422553

Strand: Reverse

Name: ycdC [C]

Synonym: STH2255

Alternate gene names: 51893393

Gene position: 2422553-2421906 (Counterclockwise)

Preceding gene: 51893394

Following gene: 51893392

Centisome position: 67.93

GC content: 69.29

Gene sequence:

>648_bases
TTGACAACGGGCCCGGCATCTCCCATGTCCCCCCGTCCGAAGAACCCGCCGCCGGATCGGCGGGCGGAGATCCTCGACGC
CGCCCTGCGGCTCTTCGCCGAGAAGGGGTACGCCGAGGCCACCAACGCCGAGATCGCCAAGGAGGCCGGGGTCACCGCGG
CGGCACTCTACTACTACTTCCCCAGCAAGGAGGAGCTGTTCAGGACCGCGGTGCGCCAGCACATCGGGCGGTTTGTCCCG
ACGCTGCGGGCGCTGACGGCGCAGGCGCCCGCGGACGCCTCCGGTCCGGAGGCCGTCGGGATGATCCTCCGGAACGCGCT
GGCTTTCTTCACGGAGGAGAAGACGCAGCTGGTGCTCCGGATCGTCCTGGCCGAGGGGCCCCGGCGCCCCGAGATCCGCC
AGATCTGGATCGACCAGATCACCGGGATCTTCGAATTTTTGGCCCCCTTCGTGATGAACGCCATCGCCTCGGGGCAGATC
CGCCCCATCGACCCCCGGCTGATCTTCGTCCTGCTCCAGGGCCCCATGCTGTCGACCGTGATCATCCGGGACCTCCTGCA
GGTTCCCGCGCTGGAGGGGCTCACCAACGACGCCGTGGTCGACGCGGTCCTGGAGACCACGCTGGCCGGCCTTCGGACCG
ACGGCTGA

Upstream 100 bases:

>100_bases
CCGGAGCGGGGTCTTTCCCTCGATCGAGCAAGGTGTGGGGCTGCGGGAGCGGGATTCCCGCAGCCCCTGAGCTTTTTCGC
CCTCTCCCGCGATCCGCCCG

Downstream 100 bases:

>100_bases
GAGAGGAGGAACACGCCGTGTTCCAGCGCATCCTGGCCCTGGCCCAGAAGGAGTTCATCCAGATCCGGCGCGACCGGCGG
AACCTGGCGATGATGCTGGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; TetR Family Transcription Regulator Protein; Transcription Regulator Tetr Family; Tetr Family Transcriptional Regulator; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTTGPASPMSPRPKNPPPDRRAEILDAALRLFAEKGYAEATNAEIAKEAGVTAAALYYYFPSKEELFRTAVRQHIGRFVP
TLRALTAQAPADASGPEAVGMILRNALAFFTEEKTQLVLRIVLAEGPRRPEIRQIWIDQITGIFEFLAPFVMNAIASGQI
RPIDPRLIFVLLQGPMLSTVIIRDLLQVPALEGLTNDAVVDAVLETTLAGLRTDG

Sequences:

>Translated_215_residues
MTTGPASPMSPRPKNPPPDRRAEILDAALRLFAEKGYAEATNAEIAKEAGVTAAALYYYFPSKEELFRTAVRQHIGRFVP
TLRALTAQAPADASGPEAVGMILRNALAFFTEEKTQLVLRIVLAEGPRRPEIRQIWIDQITGIFEFLAPFVMNAIASGQI
RPIDPRLIFVLLQGPMLSTVIIRDLLQVPALEGLTNDAVVDAVLETTLAGLRTDG
>Mature_214_residues
TTGPASPMSPRPKNPPPDRRAEILDAALRLFAEKGYAEATNAEIAKEAGVTAAALYYYFPSKEELFRTAVRQHIGRFVPT
LRALTAQAPADASGPEAVGMILRNALAFFTEEKTQLVLRIVLAEGPRRPEIRQIWIDQITGIFEFLAPFVMNAIASGQIR
PIDPRLIFVLLQGPMLSTVIIRDLLQVPALEGLTNDAVVDAVLETTLAGLRTDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23463; Mature: 23331

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGPASPMSPRPKNPPPDRRAEILDAALRLFAEKGYAEATNAEIAKEAGVTAAALYYYF
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHC
PSKEELFRTAVRQHIGRFVPTLRALTAQAPADASGPEAVGMILRNALAFFTEEKTQLVLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVLAEGPRRPEIRQIWIDQITGIFEFLAPFVMNAIASGQIRPIDPRLIFVLLQGPMLSTV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCHHHHH
IIRDLLQVPALEGLTNDAVVDAVLETTLAGLRTDG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTGPASPMSPRPKNPPPDRRAEILDAALRLFAEKGYAEATNAEIAKEAGVTAAALYYYF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHC
PSKEELFRTAVRQHIGRFVPTLRALTAQAPADASGPEAVGMILRNALAFFTEEKTQLVLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVLAEGPRRPEIRQIWIDQITGIFEFLAPFVMNAIASGQIRPIDPRLIFVLLQGPMLSTV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCHHHHH
IIRDLLQVPALEGLTNDAVVDAVLETTLAGLRTDG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA