Click here to switch to the map view.

The map label for this gene is gerKA1 [H]

Identifier: 51893244

GI number: 51893244

Start: 2246969

End: 2248624

Strand: Reverse

Name: gerKA1 [H]

Synonym: STH2106

Alternate gene names: 51893244

Gene position: 2248624-2246969 (Counterclockwise)

Preceding gene: 51893245

Following gene: 51893243

Centisome position: 63.05

GC content: 68.42

Gene sequence:

>1656_bases
GTGGACCACCAGAAGATCATCCAGTATCTGCGCCGCTGGCAGGTGGCGCCGGCCGACGCCCTGGCGGCGCAGGTGGAGGC
CTGCGGGGGGGCCTGGCTGCCGGACGAGGTCCAGCTGGCCCTGGCCGCCGAGAAGGGCAACATGCCCGTCAGCCCTGCGC
TGGCGGAGAACCGGGAAATGGTGCGGACGCTGATGGGCTACAGCTCGGATCTGCTGGAACGGAGCCTGTACCTCGGCGCG
AACCGGGTGCCCGCGGCGCTTTTCTGCGTGGACGGCCTGGCGGAACGGATGCAGGTGATGACGATCCTCGAGTCGCTGGC
GGTCCAGAGCCACCGGGAGGCGGTGCCCACCGACTCCGTGGACGGCTGCCTCAGGACGCTGCAGCAGATGATCCCCAGCG
TTACGCTCCGGTCGGTGACCAGCCTCGGGCAGGCCCTGGAGGCGCTGGTGACCGGCGACACCATCCTCTTCGTGGACGGG
ATGCCCTTCGCACTGGTGCTGCCCACCGACGGGCCGCCCGGCCGTCAGCCCGACGAGCCGCTCACCGAACCGGTGGTGCG
GGGGCCGAAGGATGGCTTCACCGAGACCCTGTCGGACAACCTGGCCCTCATCCGCCGTCGCATCCGGGATGATCGGCTGC
GGATCGAGCGGTTCACCCTGGGGGAGCGTTCGAAGACCCGTGTGGTGATCATCTACCTCATGGGCATTGCGCCGCCGGAG
ATGGTCCAGGAGGTCCGCAACCGCATCGGCCGCATCCAGGCGGATGCGGTGCTGGAAAGCGGCCATATTGAGGAACTGAT
TGAGGACGATCCCTTCACGATCTTCCCGCTCCTGAAGGTCACCGAGCGGCCCGATGTGGCCACCGCGGGGATGCTGGAAG
GCAAGGTGGCCGTGCTGGTGGACGGCTCGCCGAACGTGCTGCTCATGCCCTCGACGCTGGTGGCGGAGATGCAGTCTCCG
GAGGACTACTACCACCGCTGGCCGATCTCGTCCTTCGTCCGGGCCCTGCGGTACCTTTACCTCCTCATCGCCTTCCTGGG
CCCCTCGATCTACGTCGCGATCACCACCTTCCATCAGGAGCTGATTCCCACCAACCTGCTCACGAACCTGATCGCGGCGC
GCGAAGGGGTCCCGTTCCCGGCCGTGATGGAGGCGCTGATGATGGAGCTCACGATGGAGGCCCTGCGGGAGGCCGGCGTG
CGGCTGCCCAAGGTGGTGGGGCAGGCGGTGTCCATCGTGGGCGCGTTGGTCATCGGCGAGTCGGCCGTGCAGGCCGGTCT
CGTCTCGCCGGTCATGGTGATCGTCGTGGCGCTGACCGCGATCTCCTCGTTCATCATCCCGCTGTACGCGATGTCGCTGG
CCGTGCGGCTCCTGCGCTTCTTCCTCATCGTCCTGGCCGGCACGTTCGGCTTCTTCGGCATCGTCGTGGGACTGATGGCG
CTGTTCGTCCACCTGAACACCCTCCGTTCCTTCGGCGTGCCGTACCTGTCGCCCATCGTGCCGCCCACCCTCGCGGATCA
GCGCGACGTGTTCATCCGGGTCCCCTGGTGGGCCATCAGGCGCCGGCCGCGGTTCATGCCCGCGGTGGACTACCCGCGCA
GCGGCCCGGACAACCGGCCCCGTCCCCCGCAGCCACAGGGAGGCCAAGCCCGGTGA

Upstream 100 bases:

>100_bases
CTTGGCTGCAGGAAGCCGCCGTCTTCGCGTCCGCGGTCCCGGTCGCATACGGACTTCCCCGGGCTCAAAGACTACAGGCG
GCGGGGAGGTGCGACTGCCG

Downstream 100 bases:

>100_bases
AGATCTGGATCAGCGGCGGACTCTACGCTTCGGTGTTGGTTGTGACGCAGTTCATCATGCAGTACGTGATGCTTCCCCGG
TTGCTGCTGGAAAGCGCCGG

Product: spore germination protein KA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MDHQKIIQYLRRWQVAPADALAAQVEACGGAWLPDEVQLALAAEKGNMPVSPALAENREMVRTLMGYSSDLLERSLYLGA
NRVPAALFCVDGLAERMQVMTILESLAVQSHREAVPTDSVDGCLRTLQQMIPSVTLRSVTSLGQALEALVTGDTILFVDG
MPFALVLPTDGPPGRQPDEPLTEPVVRGPKDGFTETLSDNLALIRRRIRDDRLRIERFTLGERSKTRVVIIYLMGIAPPE
MVQEVRNRIGRIQADAVLESGHIEELIEDDPFTIFPLLKVTERPDVATAGMLEGKVAVLVDGSPNVLLMPSTLVAEMQSP
EDYYHRWPISSFVRALRYLYLLIAFLGPSIYVAITTFHQELIPTNLLTNLIAAREGVPFPAVMEALMMELTMEALREAGV
RLPKVVGQAVSIVGALVIGESAVQAGLVSPVMVIVVALTAISSFIIPLYAMSLAVRLLRFFLIVLAGTFGFFGIVVGLMA
LFVHLNTLRSFGVPYLSPIVPPTLADQRDVFIRVPWWAIRRRPRFMPAVDYPRSGPDNRPRPPQPQGGQAR

Sequences:

>Translated_551_residues
MDHQKIIQYLRRWQVAPADALAAQVEACGGAWLPDEVQLALAAEKGNMPVSPALAENREMVRTLMGYSSDLLERSLYLGA
NRVPAALFCVDGLAERMQVMTILESLAVQSHREAVPTDSVDGCLRTLQQMIPSVTLRSVTSLGQALEALVTGDTILFVDG
MPFALVLPTDGPPGRQPDEPLTEPVVRGPKDGFTETLSDNLALIRRRIRDDRLRIERFTLGERSKTRVVIIYLMGIAPPE
MVQEVRNRIGRIQADAVLESGHIEELIEDDPFTIFPLLKVTERPDVATAGMLEGKVAVLVDGSPNVLLMPSTLVAEMQSP
EDYYHRWPISSFVRALRYLYLLIAFLGPSIYVAITTFHQELIPTNLLTNLIAAREGVPFPAVMEALMMELTMEALREAGV
RLPKVVGQAVSIVGALVIGESAVQAGLVSPVMVIVVALTAISSFIIPLYAMSLAVRLLRFFLIVLAGTFGFFGIVVGLMA
LFVHLNTLRSFGVPYLSPIVPPTLADQRDVFIRVPWWAIRRRPRFMPAVDYPRSGPDNRPRPPQPQGGQAR
>Mature_551_residues
MDHQKIIQYLRRWQVAPADALAAQVEACGGAWLPDEVQLALAAEKGNMPVSPALAENREMVRTLMGYSSDLLERSLYLGA
NRVPAALFCVDGLAERMQVMTILESLAVQSHREAVPTDSVDGCLRTLQQMIPSVTLRSVTSLGQALEALVTGDTILFVDG
MPFALVLPTDGPPGRQPDEPLTEPVVRGPKDGFTETLSDNLALIRRRIRDDRLRIERFTLGERSKTRVVIIYLMGIAPPE
MVQEVRNRIGRIQADAVLESGHIEELIEDDPFTIFPLLKVTERPDVATAGMLEGKVAVLVDGSPNVLLMPSTLVAEMQSP
EDYYHRWPISSFVRALRYLYLLIAFLGPSIYVAITTFHQELIPTNLLTNLIAAREGVPFPAVMEALMMELTMEALREAGV
RLPKVVGQAVSIVGALVIGESAVQAGLVSPVMVIVVALTAISSFIIPLYAMSLAVRLLRFFLIVLAGTFGFFGIVVGLMA
LFVHLNTLRSFGVPYLSPIVPPTLADQRDVFIRVPWWAIRRRPRFMPAVDYPRSGPDNRPRPPQPQGGQAR

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 60668; Mature: 60668

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHQKIIQYLRRWQVAPADALAAQVEACGGAWLPDEVQLALAAEKGNMPVSPALAENREM
CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHEEEEECCCCCCCCCHHHHHHHH
VRTLMGYSSDLLERSLYLGANRVPAALFCVDGLAERMQVMTILESLAVQSHREAVPTDSV
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DGCLRTLQQMIPSVTLRSVTSLGQALEALVTGDTILFVDGMPFALVLPTDGPPGRQPDEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCCC
LTEPVVRGPKDGFTETLSDNLALIRRRIRDDRLRIERFTLGERSKTRVVIIYLMGIAPPE
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEECCCCHH
MVQEVRNRIGRIQADAVLESGHIEELIEDDPFTIFPLLKVTERPDVATAGMLEGKVAVLV
HHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCEEEHHHHHCCCCCCCHHCCCCCCEEEEE
DGSPNVLLMPSTLVAEMQSPEDYYHRWPISSFVRALRYLYLLIAFLGPSIYVAITTFHQE
ECCCCEEEECHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
LIPTNLLTNLIAAREGVPFPAVMEALMMELTMEALREAGVRLPKVVGQAVSIVGALVIGE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SAVQAGLVSPVMVIVVALTAISSFIIPLYAMSLAVRLLRFFLIVLAGTFGFFGIVVGLMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVHLNTLRSFGVPYLSPIVPPTLADQRDVFIRVPWWAIRRRPRFMPAVDYPRSGPDNRP
HHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCC
RPPQPQGGQAR
CCCCCCCCCCC
>Mature Secondary Structure
MDHQKIIQYLRRWQVAPADALAAQVEACGGAWLPDEVQLALAAEKGNMPVSPALAENREM
CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHEEEEECCCCCCCCCHHHHHHHH
VRTLMGYSSDLLERSLYLGANRVPAALFCVDGLAERMQVMTILESLAVQSHREAVPTDSV
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DGCLRTLQQMIPSVTLRSVTSLGQALEALVTGDTILFVDGMPFALVLPTDGPPGRQPDEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCCC
LTEPVVRGPKDGFTETLSDNLALIRRRIRDDRLRIERFTLGERSKTRVVIIYLMGIAPPE
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEECCCCHH
MVQEVRNRIGRIQADAVLESGHIEELIEDDPFTIFPLLKVTERPDVATAGMLEGKVAVLV
HHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCEEEHHHHHCCCCCCCHHCCCCCCEEEEE
DGSPNVLLMPSTLVAEMQSPEDYYHRWPISSFVRALRYLYLLIAFLGPSIYVAITTFHQE
ECCCCEEEECHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
LIPTNLLTNLIAAREGVPFPAVMEALMMELTMEALREAGVRLPKVVGQAVSIVGALVIGE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SAVQAGLVSPVMVIVVALTAISSFIIPLYAMSLAVRLLRFFLIVLAGTFGFFGIVVGLMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVHLNTLRSFGVPYLSPIVPPTLADQRDVFIRVPWWAIRRRPRFMPAVDYPRSGPDNRP
HHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCC
RPPQPQGGQAR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]