Click here to switch to the map view.

The map label for this gene is ddpC [H]

Identifier: 51893093

GI number: 51893093

Start: 2095433

End: 2096785

Strand: Reverse

Name: ddpC [H]

Synonym: STH1955

Alternate gene names: 51893093

Gene position: 2096785-2095433 (Counterclockwise)

Preceding gene: 51893094

Following gene: 51893092

Centisome position: 58.8

GC content: 71.84

Gene sequence:

>1353_bases
GTGAGCGCCGCGCAGAAGGGGTCCCGCCTCCCCCTCATTGCAGGCGGACTGCTGGTCGGCCTGCTGCTGCTGGCAGCTGT
GTTCGCCGACGAGATCACCGCCGTCTCGCCCCACTACTGGGATGCCCGCAGCAGCATCCTGGAAGGCAGGCCGCCCTTCC
CCCCGGGCCCCGGTCACCCGCTGGGGACCGATGAGTGGGGCCGCGACGTGTGGAGCCGCGTCGTCTACGGCACTCGTTGG
TCGCTGCTCTTTGCGGCCCTGGTGACGGCCGGCCGGATGCTGATCGGCCTTGCGGCGACCTTTGCGGCGGTCTACGGTCC
CCGGCGCCTGGGCTGGCTGGTGGACAAGCTGTACGTGATGACCACCGCGATCCCGCCCCTGGTCACCTATCTGCTTCTGC
TGTCGTCACCGGTGAAGAACACCATCGGGCTCTGGCCCAACGTGGCGCTCACCGCCTGCGTGCTCACCCTGGTGGAGTGG
CCCCGGGTCGCGGTGACGCTCAAGGGCAGGCTCCAACAGCTGATGGCCGAGCCCTTCGTGGAGGGGGCCGTGGCCGTCGG
CGGGAGCCGCTGGCACGTCTTCCACATCCACCTGCTGCCCCACCTCTGGCCGACCCTGCTCCACCTGGTGGCCGCGGAGA
TGGCCCGGGCTCTCTCGGTCATCGCGCAGATGGGCATCTTCGGCATCTTGTTCGGCGGCGGGATCATGGTGGTGGGGGAC
GCACGGAACCCGGACAGGTGGTACCAGGTCAGCGGGCTTCCCGAGTGGGGTTCGCTGCTCAGCGACGGCCGTCTGCAGGT
GCTCTCCCGGCCCTGGATCGCCTTTCCGCCCGCGGTGGCGTTTCTCATCGCCGTGACCGGCTTCACCCTGCTCTCCCAGG
GGCTGGAGGGGCTCAACCTCCCCGTCGCCCGCATCAAGGAGCGCACCACGGGGCGGCTTTCGCGCAGGTGGCGGTGGGCG
CTGGCGGCCCTGCCCCTCTTTGGCCTGCTCTGGTACTACCAGGGGCTGCCCTGGGACCGGGCGGCCGGAATCCAGGCCCT
GGCAACCCGGCAGGCGGCGGCGCTTTCCGCCGGGGATGCGGAGGGGTACGCGGGCACCGTGGCGCCCGGGAGCGACGCGC
TGCGGGCGGACGCCCGCCTCCTGGCCGCCGCCCTGGCCGGGGAGCGGGTGGAGTCGGTGGACGTGGCGATGGAGGAGGTC
CGGCTGCGGGGGGCCCGGGCGCAAGCCCGGCTCACCATGACGGTCACGTTCGCCGACAGCCCTCCGCTGCACCTCAGCCG
GCCTGTGGACCTGGTGCGCCGCCTGGGCACGTGGTACGTGGAGGACCGGGAGCTCTACACCCTGCGCGGGTAA

Upstream 100 bases:

>100_bases
CCGCCGGCGCGTCGCTCGGGCTGATCTTCGCCCTGCTCTACGCCGCGGTCTCGGTTCTGCGCAGGGTGGTCGATCCGCGG
CTGAGGGGGCGTGATCTGCC

Downstream 100 bases:

>100_bases
CACGTGGACGTGACGGCGGCCTTTGACCCGCTGAACCCCTCGGTCGAGGCCATCAGCCTGCGCCAGCGGGTGAACTTCCT
GGCCACGGCCGCGGATCACG

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSAAQKGSRLPLIAGGLLVGLLLLAAVFADEITAVSPHYWDARSSILEGRPPFPPGPGHPLGTDEWGRDVWSRVVYGTRW
SLLFAALVTAGRMLIGLAATFAAVYGPRRLGWLVDKLYVMTTAIPPLVTYLLLLSSPVKNTIGLWPNVALTACVLTLVEW
PRVAVTLKGRLQQLMAEPFVEGAVAVGGSRWHVFHIHLLPHLWPTLLHLVAAEMARALSVIAQMGIFGILFGGGIMVVGD
ARNPDRWYQVSGLPEWGSLLSDGRLQVLSRPWIAFPPAVAFLIAVTGFTLLSQGLEGLNLPVARIKERTTGRLSRRWRWA
LAALPLFGLLWYYQGLPWDRAAGIQALATRQAAALSAGDAEGYAGTVAPGSDALRADARLLAAALAGERVESVDVAMEEV
RLRGARAQARLTMTVTFADSPPLHLSRPVDLVRRLGTWYVEDRELYTLRG

Sequences:

>Translated_450_residues
MSAAQKGSRLPLIAGGLLVGLLLLAAVFADEITAVSPHYWDARSSILEGRPPFPPGPGHPLGTDEWGRDVWSRVVYGTRW
SLLFAALVTAGRMLIGLAATFAAVYGPRRLGWLVDKLYVMTTAIPPLVTYLLLLSSPVKNTIGLWPNVALTACVLTLVEW
PRVAVTLKGRLQQLMAEPFVEGAVAVGGSRWHVFHIHLLPHLWPTLLHLVAAEMARALSVIAQMGIFGILFGGGIMVVGD
ARNPDRWYQVSGLPEWGSLLSDGRLQVLSRPWIAFPPAVAFLIAVTGFTLLSQGLEGLNLPVARIKERTTGRLSRRWRWA
LAALPLFGLLWYYQGLPWDRAAGIQALATRQAAALSAGDAEGYAGTVAPGSDALRADARLLAAALAGERVESVDVAMEEV
RLRGARAQARLTMTVTFADSPPLHLSRPVDLVRRLGTWYVEDRELYTLRG
>Mature_449_residues
SAAQKGSRLPLIAGGLLVGLLLLAAVFADEITAVSPHYWDARSSILEGRPPFPPGPGHPLGTDEWGRDVWSRVVYGTRWS
LLFAALVTAGRMLIGLAATFAAVYGPRRLGWLVDKLYVMTTAIPPLVTYLLLLSSPVKNTIGLWPNVALTACVLTLVEWP
RVAVTLKGRLQQLMAEPFVEGAVAVGGSRWHVFHIHLLPHLWPTLLHLVAAEMARALSVIAQMGIFGILFGGGIMVVGDA
RNPDRWYQVSGLPEWGSLLSDGRLQVLSRPWIAFPPAVAFLIAVTGFTLLSQGLEGLNLPVARIKERTTGRLSRRWRWAL
AALPLFGLLWYYQGLPWDRAAGIQALATRQAAALSAGDAEGYAGTVAPGSDALRADARLLAAALAGERVESVDVAMEEVR
LRGARAQARLTMTVTFADSPPLHLSRPVDLVRRLGTWYVEDRELYTLRG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=303, Percent_Identity=27.3927392739274, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787054, Length=288, Percent_Identity=25.3472222222222, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 48886; Mature: 48755

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAQKGSRLPLIAGGLLVGLLLLAAVFADEITAVSPHYWDARSSILEGRPPFPPGPGHP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCC
LGTDEWGRDVWSRVVYGTRWSLLFAALVTAGRMLIGLAATFAAVYGPRRLGWLVDKLYVM
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TTAIPPLVTYLLLLSSPVKNTIGLWPNVALTACVLTLVEWPRVAVTLKGRLQQLMAEPFV
HHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHH
EGAVAVGGSRWHVFHIHLLPHLWPTLLHLVAAEMARALSVIAQMGIFGILFGGGIMVVGD
HHHHEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
ARNPDRWYQVSGLPEWGSLLSDGRLQVLSRPWIAFPPAVAFLIAVTGFTLLSQGLEGLNL
CCCCCCEEEECCCCHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PVARIKERTTGRLSRRWRWALAALPLFGLLWYYQGLPWDRAAGIQALATRQAAALSAGDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
EGYAGTVAPGSDALRADARLLAAALAGERVESVDVAMEEVRLRGARAQARLTMTVTFADS
CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
PPLHLSRPVDLVRRLGTWYVEDRELYTLRG
CCCCCCCCHHHHHHHCCEEECCCEEEEECC
>Mature Secondary Structure 
SAAQKGSRLPLIAGGLLVGLLLLAAVFADEITAVSPHYWDARSSILEGRPPFPPGPGHP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCC
LGTDEWGRDVWSRVVYGTRWSLLFAALVTAGRMLIGLAATFAAVYGPRRLGWLVDKLYVM
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TTAIPPLVTYLLLLSSPVKNTIGLWPNVALTACVLTLVEWPRVAVTLKGRLQQLMAEPFV
HHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHH
EGAVAVGGSRWHVFHIHLLPHLWPTLLHLVAAEMARALSVIAQMGIFGILFGGGIMVVGD
HHHHEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
ARNPDRWYQVSGLPEWGSLLSDGRLQVLSRPWIAFPPAVAFLIAVTGFTLLSQGLEGLNL
CCCCCCEEEECCCCHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PVARIKERTTGRLSRRWRWALAALPLFGLLWYYQGLPWDRAAGIQALATRQAAALSAGDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
EGYAGTVAPGSDALRADARLLAAALAGERVESVDVAMEEVRLRGARAQARLTMTVTFADS
CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
PPLHLSRPVDLVRRLGTWYVEDRELYTLRG
CCCCCCCCHHHHHHHCCEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]