| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is gluP [H]
Identifier: 51893006
GI number: 51893006
Start: 2007710
End: 2008906
Strand: Reverse
Name: gluP [H]
Synonym: STH1868
Alternate gene names: 51893006
Gene position: 2008906-2007710 (Counterclockwise)
Preceding gene: 51893007
Following gene: 51893005
Centisome position: 56.33
GC content: 71.51
Gene sequence:
>1197_bases GTGAACTACTCGGCATATGTGGAATCGGTCGGCAGCCAGCTGGCGGACAGGGGCTTCGAGGTGCAGGCCGTGCCGCCGGA GCTGCAGGGACGTCTGGCGCTGCTGGTCTCCCGGCAGGAGGAGTGGGGGAGGCTGCTGCTCGCGCTGGCCGCAGAGCTGA ACCCGAGCGACCCGCAGGAGCGGGAGTCCCTGGCCCAAGCCTGCGGGGCGTGGGTGCGGGAGGCGCGCGGCGACGAGGTC TGGCACATGATCCTGCTGTTCCCCTTCGACCGTACGGTGGGCGAGGAGGAGGCGGAGGCGATCGCCGCGCTGGAGGAGCG GGACCCCGGGGAACGGTGGGGCGTGATCCCCTGGTCGGCGGATCTGGCGGTGGGGCTGCTGGACCAGCACACCGGGTTCC CTCCGGTGGATGAGGCCGTGGCCCGCATCCTCACCGATGTGCCCGAGACGCCCGAGCGGCGGTTCGTGGAGGTCCGCCCG CGGTACGAGGCCCGGCGCCCCTGGCCGGGGCTGGACCGGTTTCCCGCGACACGGCTGATCCTGGCCCTGACCGTGGCCTA CTACCTCTGGACGGTGTGGATGGGCGGCGGGCTGCTGAACCTGATCAGCGGGCCGGACACCCTGTCCCTGGTGATCTGGG GCGCGAACTACAGCCTGCTCACGCTGGCCGAGCGGACGCAGCAGTGGCGGCTGGTGAGCCACCTGTTCCTCCACGGCGGC GCGATGCACCTGGCGTTCAACATGTGGGCCTTCTGGCAGGTGGGCCGTTACTGCGAGCTGATCTACGGCTCCGCGCGGAT GCTGTTCATCTACTTCGTGGCCGGCGTGATCGGCGGGGTGGCCTCGGTCGCCGTGCGTCCCGGCCTGGTGATCAGCGTCG GGGCGTCGGGCGCGATCCTGGGGCTGATGGGCGCGCTGATCTACTTCGCCACCACCGTCCGCAACCGGCGCGTCGACTGG CAGGGGCTGCTGGCTCCGGTGGCCATCAACCTGCTATTCGGCTTCGTGTACGGGCGGGTGGACAACTACGCGCACATCGG CGGCCTCCTGGGCGGACTGCTGGCGGCGTTCGTGGCCGGGGTTCCGGGCGAGCGCGGCGGCTGGCGGCAGTTGGCCGCCC CGGCCCTGGGCGTGCTGGTCGGCCTGGTGGTGGCGGGCGTCCTGCCCCTGAAGCACGTGTCGACGCTGTTGCCGTAG
Upstream 100 bases:
>100_bases TGCCGCCGGGGAAAGGTAAGCCCGTGGCAGGCGGTGAATTCGATAAGGACAGCTTTCCGGGCGATGGCGCTCGCGCCGTC GGCCGTATCGGAGGTGGGCC
Downstream 100 bases:
>100_bases GAGACGGACGGAGGCGCGCAGCGGTGTGAGTAAAGTTTTCGTGGGTACAACACATTTTTTCTCCTGAAATAGCAGGACGA GAGATGTGCCCTTCCAAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Intramembrane serine protease [H]
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MNYSAYVESVGSQLADRGFEVQAVPPELQGRLALLVSRQEEWGRLLLALAAELNPSDPQERESLAQACGAWVREARGDEV WHMILLFPFDRTVGEEEAEAIAALEERDPGERWGVIPWSADLAVGLLDQHTGFPPVDEAVARILTDVPETPERRFVEVRP RYEARRPWPGLDRFPATRLILALTVAYYLWTVWMGGGLLNLISGPDTLSLVIWGANYSLLTLAERTQQWRLVSHLFLHGG AMHLAFNMWAFWQVGRYCELIYGSARMLFIYFVAGVIGGVASVAVRPGLVISVGASGAILGLMGALIYFATTVRNRRVDW QGLLAPVAINLLFGFVYGRVDNYAHIGGLLGGLLAAFVAGVPGERGGWRQLAAPALGVLVGLVVAGVLPLKHVSTLLP
Sequences:
>Translated_398_residues MNYSAYVESVGSQLADRGFEVQAVPPELQGRLALLVSRQEEWGRLLLALAAELNPSDPQERESLAQACGAWVREARGDEV WHMILLFPFDRTVGEEEAEAIAALEERDPGERWGVIPWSADLAVGLLDQHTGFPPVDEAVARILTDVPETPERRFVEVRP RYEARRPWPGLDRFPATRLILALTVAYYLWTVWMGGGLLNLISGPDTLSLVIWGANYSLLTLAERTQQWRLVSHLFLHGG AMHLAFNMWAFWQVGRYCELIYGSARMLFIYFVAGVIGGVASVAVRPGLVISVGASGAILGLMGALIYFATTVRNRRVDW QGLLAPVAINLLFGFVYGRVDNYAHIGGLLGGLLAAFVAGVPGERGGWRQLAAPALGVLVGLVVAGVLPLKHVSTLLP >Mature_398_residues MNYSAYVESVGSQLADRGFEVQAVPPELQGRLALLVSRQEEWGRLLLALAAELNPSDPQERESLAQACGAWVREARGDEV WHMILLFPFDRTVGEEEAEAIAALEERDPGERWGVIPWSADLAVGLLDQHTGFPPVDEAVARILTDVPETPERRFVEVRP RYEARRPWPGLDRFPATRLILALTVAYYLWTVWMGGGLLNLISGPDTLSLVIWGANYSLLTLAERTQQWRLVSHLFLHGG AMHLAFNMWAFWQVGRYCELIYGSARMLFIYFVAGVIGGVASVAVRPGLVISVGASGAILGLMGALIYFATTVRNRRVDW QGLLAPVAINLLFGFVYGRVDNYAHIGGLLGGLLAAFVAGVPGERGGWRQLAAPALGVLVGLVVAGVLPLKHVSTLLP
Specific function: Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter [H]
COG id: COG0705
COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002610 - InterPro: IPR022764 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF01694 Rhomboid; PF00515 TPR_1 [H]
EC number: =3.4.21.105 [H]
Molecular weight: Translated: 43544; Mature: 43544
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYSAYVESVGSQLADRGFEVQAVPPELQGRLALLVSRQEEWGRLLLALAAELNPSDPQE CCHHHHHHHHHHHHHHCCCEEEECCHHHCCCEEHEEECHHHHHHHHHHHHHHCCCCCHHH RESLAQACGAWVREARGDEVWHMILLFPFDRTVGEEEAEAIAALEERDPGERWGVIPWSA HHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH DLAVGLLDQHTGFPPVDEAVARILTDVPETPERRFVEVRPRYEARRPWPGLDRFPATRLI HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHH LALTVAYYLWTVWMGGGLLNLISGPDTLSLVIWGANYSLLTLAERTQQWRLVSHLFLHGG HHHHHHHHHHHHHHCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC AMHLAFNMWAFWQVGRYCELIYGSARMLFIYFVAGVIGGVASVAVRPGLVISVGASGAIL HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH GLMGALIYFATTVRNRRVDWQGLLAPVAINLLFGFVYGRVDNYAHIGGLLGGLLAAFVAG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC VPGERGGWRQLAAPALGVLVGLVVAGVLPLKHVSTLLP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNYSAYVESVGSQLADRGFEVQAVPPELQGRLALLVSRQEEWGRLLLALAAELNPSDPQE CCHHHHHHHHHHHHHHCCCEEEECCHHHCCCEEHEEECHHHHHHHHHHHHHHCCCCCHHH RESLAQACGAWVREARGDEVWHMILLFPFDRTVGEEEAEAIAALEERDPGERWGVIPWSA HHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH DLAVGLLDQHTGFPPVDEAVARILTDVPETPERRFVEVRPRYEARRPWPGLDRFPATRLI HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHH LALTVAYYLWTVWMGGGLLNLISGPDTLSLVIWGANYSLLTLAERTQQWRLVSHLFLHGG HHHHHHHHHHHHHHCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC AMHLAFNMWAFWQVGRYCELIYGSARMLFIYFVAGVIGGVASVAVRPGLVISVGASGAIL HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH GLMGALIYFATTVRNRRVDWQGLLAPVAINLLFGFVYGRVDNYAHIGGLLGGLLAAFVAG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC VPGERGGWRQLAAPALGVLVGLVVAGVLPLKHVSTLLP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]