| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892938
Identifier: 51892938
GI number: 51892938
Start: 1942982
End: 1943749
Strand: Reverse
Name: 51892938
Synonym: STH1800
Alternate gene names: NA
Gene position: 1943749-1942982 (Counterclockwise)
Preceding gene: 51892939
Following gene: 51892937
Centisome position: 54.51
GC content: 69.66
Gene sequence:
>768_bases GTGGGGAATGGACCGCCTCCGCTTTGGCAAGACTCACCTCGTCAGTGCGGGAAAGGCTTCCGGGGGTGGGTGAAGATGGG CTGGCTGATCGCCGTGGGCTGCCTGGCTGCGGCGATGGCGCTCCTGTGGCTGGCGCCTGTGCAGCTGCACCTCCGGCTTG CCCAGGCGAACCTGAAGGCCGAGGTGTTTGTGGAACTGCGGGTGGGTTGGCTGCGCTTTGCGCGCGCGATCACCCTCGGG GAGAAGGCCCCCCGCGTGCGGGCGCGCACCCGGCGGCGGCCGGGTGCGAAAAAGTTGGACGTCCGCGATCTGCTGGCCGC CTCCGTCCAGGGGCTGCGCTATCTGGGCCGGGCCACCTGGTGCGAGCGGCTGAGGCTGCGGGTGGAGGTGGGCGGGCTGG ACGCCTGCGACTCGGCGCTGCTGGCGGGGCTGGGGTGGAGCCTCGTCTGCAACCTGCTGGCGCAGTTCGGTCGGCTGGTG CAGGTGAACCCGGCGGGGGTCGCGGTGGCCGTCGTTCCCAACTTTCAGCGCCCGCTCCTGCGCACGGATCTCGACTGCAT ATTGCGCGTTCCCCTGGGAAAGGCTACATGGGCAGCGGGCATGGTGCTGCGCGCGGCCCTGCGGCGCCGGGCGCTGCTTG CCCGGATCCGGGAGCGTCAGCGGAGGAAAGGGGACAGGACCGATGGCCGATCACCCGATTCAAGCCCTCATGAAGACGGC GATGGACAGCCTGAAGAGCATGGTGGACGTGAACACGGTCATCGGTGA
Upstream 100 bases:
>100_bases CGGTTCCGCCTGGCGGTGTGACGGGCTGCCGGCCCCGACGGGGGGCCGGCGGCCTTCGTCTTTCCCGCCGCCGGACGTTT CCGACGGTGAGCCCGTCGCG
Downstream 100 bases:
>100_bases TCCGGTGGAGACGCAGGACGGAACGGTCATCGTGCCGGTTTCGCGCGTGACCTTCGGCTTTGCGGCGGGCGGGTCCGAGT TCGTTCCGGCCCATGAGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MGNGPPPLWQDSPRQCGKGFRGWVKMGWLIAVGCLAAAMALLWLAPVQLHLRLAQANLKAEVFVELRVGWLRFARAITLG EKAPRVRARTRRRPGAKKLDVRDLLAASVQGLRYLGRATWCERLRLRVEVGGLDACDSALLAGLGWSLVCNLLAQFGRLV QVNPAGVAVAVVPNFQRPLLRTDLDCILRVPLGKATWAAGMVLRAALRRRALLARIRERQRRKGDRTDGRSPDSSPHEDG DGQPEEHGGREHGHR
Sequences:
>Translated_255_residues MGNGPPPLWQDSPRQCGKGFRGWVKMGWLIAVGCLAAAMALLWLAPVQLHLRLAQANLKAEVFVELRVGWLRFARAITLG EKAPRVRARTRRRPGAKKLDVRDLLAASVQGLRYLGRATWCERLRLRVEVGGLDACDSALLAGLGWSLVCNLLAQFGRLV QVNPAGVAVAVVPNFQRPLLRTDLDCILRVPLGKATWAAGMVLRAALRRRALLARIRERQRRKGDRTDGRSPDSSPHEDG DGQPEEHGGREHGHR >Mature_254_residues GNGPPPLWQDSPRQCGKGFRGWVKMGWLIAVGCLAAAMALLWLAPVQLHLRLAQANLKAEVFVELRVGWLRFARAITLGE KAPRVRARTRRRPGAKKLDVRDLLAASVQGLRYLGRATWCERLRLRVEVGGLDACDSALLAGLGWSLVCNLLAQFGRLVQ VNPAGVAVAVVPNFQRPLLRTDLDCILRVPLGKATWAAGMVLRAALRRRALLARIRERQRRKGDRTDGRSPDSSPHEDGD GQPEEHGGREHGHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28194; Mature: 28063
Theoretical pI: Translated: 11.79; Mature: 11.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNGPPPLWQDSPRQCGKGFRGWVKMGWLIAVGCLAAAMALLWLAPVQLHLRLAQANLKA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH EVFVELRVGWLRFARAITLGEKAPRVRARTRRRPGAKKLDVRDLLAASVQGLRYLGRATW HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH CERLRLRVEVGGLDACDSALLAGLGWSLVCNLLAQFGRLVQVNPAGVAVAVVPNFQRPLL HHHHHHHHEECCCCHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCHHH RTDLDCILRVPLGKATWAAGMVLRAALRRRALLARIRERQRRKGDRTDGRSPDSSPHEDG HHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC DGQPEEHGGREHGHR CCCCHHCCCCCCCCC >Mature Secondary Structure GNGPPPLWQDSPRQCGKGFRGWVKMGWLIAVGCLAAAMALLWLAPVQLHLRLAQANLKA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH EVFVELRVGWLRFARAITLGEKAPRVRARTRRRPGAKKLDVRDLLAASVQGLRYLGRATW HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH CERLRLRVEVGGLDACDSALLAGLGWSLVCNLLAQFGRLVQVNPAGVAVAVVPNFQRPLL HHHHHHHHEECCCCHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCHHH RTDLDCILRVPLGKATWAAGMVLRAALRRRALLARIRERQRRKGDRTDGRSPDSSPHEDG HHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC DGQPEEHGGREHGHR CCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA