| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892939
Identifier: 51892939
GI number: 51892939
Start: 1943829
End: 1944548
Strand: Reverse
Name: 51892939
Synonym: STH1801
Alternate gene names: NA
Gene position: 1944548-1943829 (Counterclockwise)
Preceding gene: 51892940
Following gene: 51892938
Centisome position: 54.53
GC content: 71.39
Gene sequence:
>720_bases TTGGGGTTCACGGGGCACGCCTTCGTCGACTGGGATGACACGATCGCCGAGAACATCCGCTACTTCCGGGAGGTCGAGGC GCAGATCAGCCTGCTCATCGCCGGGCGGACCGGGTTTGACCGGGACGAGGTGCAGCGGCGGGGGGCCGAGCTGGACGTGG CCGTCGCCCGGCAGATGGGGCTGGTGCGGGAGTCGCTGGCCGTCGCCTGGCTGACCTGTTACCGGGAGTTCGCCGGGCGG GCGGGGCGTCCCGTCGACCCGGTCGTGGAGGCCGAGCTGCGGCGGCTGTGCGCCATCCCCTACGAGACCCGCCAGGAGCT GCTGCCCGGCGCGGCGGAGACGCTCCGATGGCTCCACGAGGCCGGGTTCGAGGTGACGATCTGGACGGCGGGAGAGGACG CGGTGCAGCGGCGGAAGATCCAGGAGTCGGGGCTGACCCGCTGGATCCACCGGCAGACAGTGGTGCCGGAGAAGACCGCC GAGCGGCTGCGGGACGCCATCGGCGACCGCGATCCCGGCCACTGCTTCGTGGTCGGGAACTCCCGCCACTCGGACATCCG GCCGGCCCTGACGCTGGGGGTCGCCGCCTACCACGTGGATGTGGAGACGTGGGCCTACGACCATCTGGACGTGGACGAGG AGGATCCCAACTACCACCGGCTGACGCACATCGGCGAACTGCCGCGCCTTCTGGCCCAGCGGTTCCGCCTGGCGGTGTGA
Upstream 100 bases:
>100_bases GGAGGTGCAGGCCTCGCTGTTTGCGGGCGGGGAGGAACCGTCCGCCGAAGCGGCGGACGGCGGCGCAGGGGAGTCGACGC ACGGGGAGGAGGAGTAGCGG
Downstream 100 bases:
>100_bases CGGGCTGCCGGCCCCGACGGGGGGCCGGCGGCCTTCGTCTTTCCCGCCGCCGGACGTTTCCGACGGTGAGCCCGTCGCGG TGGGGAATGGACCGCCTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Haloacid Dehydrogenase Hydrolase; HAD Superfamily Hydrolase; Haloacid Dehalogenase Domain-Containing Protein Hydrolase
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MGFTGHAFVDWDDTIAENIRYFREVEAQISLLIAGRTGFDRDEVQRRGAELDVAVARQMGLVRESLAVAWLTCYREFAGR AGRPVDPVVEAELRRLCAIPYETRQELLPGAAETLRWLHEAGFEVTIWTAGEDAVQRRKIQESGLTRWIHRQTVVPEKTA ERLRDAIGDRDPGHCFVVGNSRHSDIRPALTLGVAAYHVDVETWAYDHLDVDEEDPNYHRLTHIGELPRLLAQRFRLAV
Sequences:
>Translated_239_residues MGFTGHAFVDWDDTIAENIRYFREVEAQISLLIAGRTGFDRDEVQRRGAELDVAVARQMGLVRESLAVAWLTCYREFAGR AGRPVDPVVEAELRRLCAIPYETRQELLPGAAETLRWLHEAGFEVTIWTAGEDAVQRRKIQESGLTRWIHRQTVVPEKTA ERLRDAIGDRDPGHCFVVGNSRHSDIRPALTLGVAAYHVDVETWAYDHLDVDEEDPNYHRLTHIGELPRLLAQRFRLAV >Mature_238_residues GFTGHAFVDWDDTIAENIRYFREVEAQISLLIAGRTGFDRDEVQRRGAELDVAVARQMGLVRESLAVAWLTCYREFAGRA GRPVDPVVEAELRRLCAIPYETRQELLPGAAETLRWLHEAGFEVTIWTAGEDAVQRRKIQESGLTRWIHRQTVVPEKTAE RLRDAIGDRDPGHCFVVGNSRHSDIRPALTLGVAAYHVDVETWAYDHLDVDEEDPNYHRLTHIGELPRLLAQRFRLAV
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27251; Mature: 27120
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFTGHAFVDWDDTIAENIRYFREVEAQISLLIAGRTGFDRDEVQRRGAELDVAVARQMG CCCCCCEEECCHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCCCCCHHHHHHHHH LVRESLAVAWLTCYREFAGRAGRPVDPVVEAELRRLCAIPYETRQELLPGAAETLRWLHE HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH AGFEVTIWTAGEDAVQRRKIQESGLTRWIHRQTVVPEKTAERLRDAIGDRDPGHCFVVGN CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEC SRHSDIRPALTLGVAAYHVDVETWAYDHLDVDEEDPNYHRLTHIGELPRLLAQRFRLAV CCCCCCCHHHHHHHHHEEEEHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GFTGHAFVDWDDTIAENIRYFREVEAQISLLIAGRTGFDRDEVQRRGAELDVAVARQMG CCCCCEEECCHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCCCCCHHHHHHHHH LVRESLAVAWLTCYREFAGRAGRPVDPVVEAELRRLCAIPYETRQELLPGAAETLRWLHE HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH AGFEVTIWTAGEDAVQRRKIQESGLTRWIHRQTVVPEKTAERLRDAIGDRDPGHCFVVGN CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEC SRHSDIRPALTLGVAAYHVDVETWAYDHLDVDEEDPNYHRLTHIGELPRLLAQRFRLAV CCCCCCCHHHHHHHHHEEEEHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA