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The map label for this gene is 51892935

Identifier: 51892935

GI number: 51892935

Start: 1940227

End: 1941165

Strand: Reverse

Name: 51892935

Synonym: STH1797

Alternate gene names: NA

Gene position: 1941165-1940227 (Counterclockwise)

Preceding gene: 51892936

Following gene: 51892934

Centisome position: 54.43

GC content: 74.87

Gene sequence:

>939_bases
GTGCGGCTGCCCTTCCCGCCCATGCTGCTGGAGCGCGCCGAGGCCCCCTTTGCGGACGACGACTGGGTCTATCAGGTGAA
GTGGGACGGCGTGCGGAACCTGACGCTGGTGGAGGGCGGTCGGGTGCGCCACTGGAGCCGTCGGCTGCGGGAGCGCACGG
CGCTGTTCCCCGAGTTCGACGGCCTGGCCGCGGCCCTCCCCGGGCGGCGGGCCGTGCTGGATGGCGAGATCATCGTGCTG
CAGGACGGTCGGCCGAGCTTCTCGGCCGTGCTGGAGCGGGACCTGGCGGGCAGCACGGCGGGGGCGGCCCGAAGGCGGCC
GGCCACCTTGATGCTCTTCGATCTGCTGGAGTGGGACGGCCGGGAGTTGTACGACGTGCCCCTGGCCGAGCGGCTGGCGC
TGCTGGAGGCGGTGGTTCCGCCCGACGAGGCGTGGCAGGTGGTCTCGTCCTTCCCGGGCAGCGATGGGCCGGCGCTCTAC
GCGGCCGCCGTGGCCAGGGGGCTGGAGGGGGTCGTGGCCAAGCGGCGTGCCAGCCGGTACGTGCCGGGGGCGCGCAGCCG
CGACTGGCTGAAGGTCAAGCGCCGGTCGGAGATGCTGGCCGTGGTGGTGGGCTACACCAACCCGACCGGCCGCCCGGGCG
GGCTGCTGCTGGGCGCCTACCGGGACGGGCGGCTCCGCTACATCGGCCGGGTAGGCTCGGGGCTGAGCGGCGCGGACCTG
GCCGCGATCCGGCACCACCTGCCGTCCGGCCCGTGCCCCCTCGCGGAGATTCCGAGGCTCCGGGAGCGGTTCGGCGGCGA
CCCCGGACCGGTGGTGTGGGTGGAGCCCCTCCTCACGGTGCGGGTGAGCTTCACCGAGTGGACCGAGGAGGGGCGGCTGC
GGGACCCGGTGGTGGTCGGGTTTTCGGCCGAGCCGCCGGAGGCGGCGGTGATCCCGTAA

Upstream 100 bases:

>100_bases
AGACCGCGCCCAACGGGGCTGCCCCGCCCGGCCCGTTCGCTGGGAGCGACCGCGCGGCCGAGGTCGGGCCGGACGAGACG
GCGCCCGGAGGGCCGTAGGC

Downstream 100 bases:

>100_bases
GAGACGCAGCGAGGAGGAAAGTCGGATGACGGAGCAGGAGTGGCAGCAGCATCCGGAGCGCGAGGTGCCGGCGCTTCCGG
GGCAGGAACCGCACTTCCCG

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MRLPFPPMLLERAEAPFADDDWVYQVKWDGVRNLTLVEGGRVRHWSRRLRERTALFPEFDGLAAALPGRRAVLDGEIIVL
QDGRPSFSAVLERDLAGSTAGAARRRPATLMLFDLLEWDGRELYDVPLAERLALLEAVVPPDEAWQVVSSFPGSDGPALY
AAAVARGLEGVVAKRRASRYVPGARSRDWLKVKRRSEMLAVVVGYTNPTGRPGGLLLGAYRDGRLRYIGRVGSGLSGADL
AAIRHHLPSGPCPLAEIPRLRERFGGDPGPVVWVEPLLTVRVSFTEWTEEGRLRDPVVVGFSAEPPEAAVIP

Sequences:

>Translated_312_residues
MRLPFPPMLLERAEAPFADDDWVYQVKWDGVRNLTLVEGGRVRHWSRRLRERTALFPEFDGLAAALPGRRAVLDGEIIVL
QDGRPSFSAVLERDLAGSTAGAARRRPATLMLFDLLEWDGRELYDVPLAERLALLEAVVPPDEAWQVVSSFPGSDGPALY
AAAVARGLEGVVAKRRASRYVPGARSRDWLKVKRRSEMLAVVVGYTNPTGRPGGLLLGAYRDGRLRYIGRVGSGLSGADL
AAIRHHLPSGPCPLAEIPRLRERFGGDPGPVVWVEPLLTVRVSFTEWTEEGRLRDPVVVGFSAEPPEAAVIP
>Mature_312_residues
MRLPFPPMLLERAEAPFADDDWVYQVKWDGVRNLTLVEGGRVRHWSRRLRERTALFPEFDGLAAALPGRRAVLDGEIIVL
QDGRPSFSAVLERDLAGSTAGAARRRPATLMLFDLLEWDGRELYDVPLAERLALLEAVVPPDEAWQVVSSFPGSDGPALY
AAAVARGLEGVVAKRRASRYVPGARSRDWLKVKRRSEMLAVVVGYTNPTGRPGGLLLGAYRDGRLRYIGRVGSGLSGADL
AAIRHHLPSGPCPLAEIPRLRERFGGDPGPVVWVEPLLTVRVSFTEWTEEGRLRDPVVVGFSAEPPEAAVIP

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 34281; Mature: 34281

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPFPPMLLERAEAPFADDDWVYQVKWDGVRNLTLVEGGRVRHWSRRLRERTALFPEFD
CCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC
GLAAALPGRRAVLDGEIIVLQDGRPSFSAVLERDLAGSTAGAARRRPATLMLFDLLEWDG
CHHHCCCCCEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCHHHCCCCEEEEEEHHCCCC
RELYDVPLAERLALLEAVVPPDEAWQVVSSFPGSDGPALYAAAVARGLEGVVAKRRASRY
CEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
VPGARSRDWLKVKRRSEMLAVVVGYTNPTGRPGGLLLGAYRDGRLRYIGRVGSGLSGADL
CCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCHHH
AAIRHHLPSGPCPLAEIPRLRERFGGDPGPVVWVEPLLTVRVSFTEWTEEGRLRDPVVVG
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEHHHCCCCCCCCCEEEE
FSAEPPEAAVIP
ECCCCCCCCCCC
>Mature Secondary Structure
MRLPFPPMLLERAEAPFADDDWVYQVKWDGVRNLTLVEGGRVRHWSRRLRERTALFPEFD
CCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC
GLAAALPGRRAVLDGEIIVLQDGRPSFSAVLERDLAGSTAGAARRRPATLMLFDLLEWDG
CHHHCCCCCEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCHHHCCCCEEEEEEHHCCCC
RELYDVPLAERLALLEAVVPPDEAWQVVSSFPGSDGPALYAAAVARGLEGVVAKRRASRY
CEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
VPGARSRDWLKVKRRSEMLAVVVGYTNPTGRPGGLLLGAYRDGRLRYIGRVGSGLSGADL
CCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCHHH
AAIRHHLPSGPCPLAEIPRLRERFGGDPGPVVWVEPLLTVRVSFTEWTEEGRLRDPVVVG
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEHHHCCCCCCCCCEEEE
FSAEPPEAAVIP
ECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]