| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892913
Identifier: 51892913
GI number: 51892913
Start: 1919850
End: 1920779
Strand: Reverse
Name: 51892913
Synonym: STH1775
Alternate gene names: NA
Gene position: 1920779-1919850 (Counterclockwise)
Preceding gene: 51892914
Following gene: 51892912
Centisome position: 53.86
GC content: 70.11
Gene sequence:
>930_bases GTGATTGATGGGCACGCGGATTCGATCCTGATGGTCCTGGCCGGCGAGCGCACCCTGACCGAACGGTCGGACAAGGGGCA CATCGACTGGCCCCGGGCCCGGGAGGCCGGGGTCACCTGCACGGTGCAGGCGGCCTGGGTCGACCCGGTCTACTACCCCG TGGCCCCGCGGCGGGCGCACGAGGCCATCGACGGGCTGCTGGGCCAGATCGACGCGGCCGAAGGCGTGCGGCTGGTGCTG CGGGCCGACGACGTCACCGCCGCCCACGCGGCCGGCGAACTGGCCGTGCTGCTGAACATCGAGGGGGCGGAGGCGATCCA GGGGTCCCTGGCCCTGCTGCGCAACTACTACCGGCTGGGCGTGCGCATGATGGGCCTCGTCTGGAACCACCGCAACGAGG TGGCCGAAGGGGTCGGCGAACCCGAGTCCGGCGGCGGCCTCACCCGGTTCGGTCGCGAGGTGGTGCGCGAGATGAACCGG TTGGGCATGCTCATCGACCTGGCCCACATCACGCCGGCAGGGTTCTTCCAGGTGCTGGAACTGTCGGAGGACCCGGTGCT GTTCACCCACGGCAACTGCCAGGCGCTGTACGATCACCCCCGGAACCTGACCGATGAGCAGATCCGGGCCCTGGCCGCGC ACGGCGGCGTGTTCGGCATCTCCTTCGTGTCCAGCTTTATGGGCCGGGAGACCGCAGCCTTGACGACGGTGGCCGATCAC ATCGACCACGTGTGCCAGTTGCTGGGCAATGCCGACCACGTCGGCCTGGGCTCGGACTTCGACGGGGCGACGCCGCCGCC CGGGCTGGAGGACGTCACCTGCCTGCCCCGGTTGACGGCGGAGCTCATGCGGCGGGGGTACGGGGAGGCCGACCTGGTCA AGATCCTGGGCGGCAACTACTTGCGGGTCTTCCAACAGGTTCTGCGGTAG
Upstream 100 bases:
>100_bases CGCCCATCGAAATGGAAACACTCCTAACGGCAACGCGCTCGGGAGGGAGTCGCAGATGGTGCACCTGGAGGAGGCAGCGG CGCTGCACCGCCGCTGCCCG
Downstream 100 bases:
>100_bases CGGTTCCGGCGCGGTGGCTCGATTCAGGGAAGGAGGCGTCACACATGAAGGTCGAGGTAACCAGCCAGGCTCTCACCGAA GTCGCCGTGGACGTGCTGAT
Product: putative dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MIDGHADSILMVLAGERTLTERSDKGHIDWPRAREAGVTCTVQAAWVDPVYYPVAPRRAHEAIDGLLGQIDAAEGVRLVL RADDVTAAHAAGELAVLLNIEGAEAIQGSLALLRNYYRLGVRMMGLVWNHRNEVAEGVGEPESGGGLTRFGREVVREMNR LGMLIDLAHITPAGFFQVLELSEDPVLFTHGNCQALYDHPRNLTDEQIRALAAHGGVFGISFVSSFMGRETAALTTVADH IDHVCQLLGNADHVGLGSDFDGATPPPGLEDVTCLPRLTAELMRRGYGEADLVKILGGNYLRVFQQVLR
Sequences:
>Translated_309_residues MIDGHADSILMVLAGERTLTERSDKGHIDWPRAREAGVTCTVQAAWVDPVYYPVAPRRAHEAIDGLLGQIDAAEGVRLVL RADDVTAAHAAGELAVLLNIEGAEAIQGSLALLRNYYRLGVRMMGLVWNHRNEVAEGVGEPESGGGLTRFGREVVREMNR LGMLIDLAHITPAGFFQVLELSEDPVLFTHGNCQALYDHPRNLTDEQIRALAAHGGVFGISFVSSFMGRETAALTTVADH IDHVCQLLGNADHVGLGSDFDGATPPPGLEDVTCLPRLTAELMRRGYGEADLVKILGGNYLRVFQQVLR >Mature_309_residues MIDGHADSILMVLAGERTLTERSDKGHIDWPRAREAGVTCTVQAAWVDPVYYPVAPRRAHEAIDGLLGQIDAAEGVRLVL RADDVTAAHAAGELAVLLNIEGAEAIQGSLALLRNYYRLGVRMMGLVWNHRNEVAEGVGEPESGGGLTRFGREVVREMNR LGMLIDLAHITPAGFFQVLELSEDPVLFTHGNCQALYDHPRNLTDEQIRALAAHGGVFGISFVSSFMGRETAALTTVADH IDHVCQLLGNADHVGLGSDFDGATPPPGLEDVTCLPRLTAELMRRGYGEADLVKILGGNYLRVFQQVLR
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI11641269, Length=233, Percent_Identity=39.4849785407725, Blast_Score=159, Evalue=4e-39, Organism=Homo sapiens, GI189458885, Length=330, Percent_Identity=34.2424242424242, Blast_Score=156, Evalue=2e-38, Organism=Homo sapiens, GI4758190, Length=330, Percent_Identity=34.2424242424242, Blast_Score=156, Evalue=2e-38, Organism=Homo sapiens, GI193211608, Length=280, Percent_Identity=34.2857142857143, Blast_Score=150, Evalue=2e-36, Organism=Homo sapiens, GI193211610, Length=280, Percent_Identity=34.6428571428571, Blast_Score=146, Evalue=2e-35, Organism=Drosophila melanogaster, GI221475880, Length=304, Percent_Identity=36.5131578947368, Blast_Score=172, Evalue=3e-43, Organism=Drosophila melanogaster, GI281362638, Length=298, Percent_Identity=33.5570469798658, Blast_Score=154, Evalue=1e-37, Organism=Drosophila melanogaster, GI281362636, Length=298, Percent_Identity=33.5570469798658, Blast_Score=154, Evalue=1e-37, Organism=Drosophila melanogaster, GI161083233, Length=306, Percent_Identity=35.6209150326797, Blast_Score=152, Evalue=3e-37, Organism=Drosophila melanogaster, GI21356391, Length=298, Percent_Identity=27.8523489932886, Blast_Score=92, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 33507; Mature: 33507
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS00869 RENAL_DIPEPTIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDGHADSILMVLAGERTLTERSDKGHIDWPRAREAGVTCTVQAAWVDPVYYPVAPRRAH CCCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHCCCEEEEEEEEECCEECCCCCHHHH EAIDGLLGQIDAAEGVRLVLRADDVTAAHAAGELAVLLNIEGAEAIQGSLALLRNYYRLG HHHHHHHHCCCCCCCEEEEEEECCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH VRMMGLVWNHRNEVAEGVGEPESGGGLTRFGREVVREMNRLGMLIDLAHITPAGFFQVLE HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC LSEDPVLFTHGNCQALYDHPRNLTDEQIRALAAHGGVFGISFVSSFMGRETAALTTVADH CCCCCEEEECCCCCEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH IDHVCQLLGNADHVGLGSDFDGATPPPGLEDVTCLPRLTAELMRRGYGEADLVKILGGNY HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCH LRVFQQVLR HHHHHHHHC >Mature Secondary Structure MIDGHADSILMVLAGERTLTERSDKGHIDWPRAREAGVTCTVQAAWVDPVYYPVAPRRAH CCCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHCCCEEEEEEEEECCEECCCCCHHHH EAIDGLLGQIDAAEGVRLVLRADDVTAAHAAGELAVLLNIEGAEAIQGSLALLRNYYRLG HHHHHHHHCCCCCCCEEEEEEECCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH VRMMGLVWNHRNEVAEGVGEPESGGGLTRFGREVVREMNRLGMLIDLAHITPAGFFQVLE HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC LSEDPVLFTHGNCQALYDHPRNLTDEQIRALAAHGGVFGISFVSSFMGRETAALTTVADH CCCCCEEEECCCCCEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH IDHVCQLLGNADHVGLGSDFDGATPPPGLEDVTCLPRLTAELMRRGYGEADLVKILGGNY HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCH LRVFQQVLR HHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]