| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892907
Identifier: 51892907
GI number: 51892907
Start: 1914472
End: 1915698
Strand: Reverse
Name: 51892907
Synonym: STH1769
Alternate gene names: NA
Gene position: 1915698-1914472 (Counterclockwise)
Preceding gene: 51892908
Following gene: 51892906
Centisome position: 53.72
GC content: 74.41
Gene sequence:
>1227_bases GTGCGCCTGGGCAGCGGATCCGGGCTGCAGTGGCTGGGCGCAGCTGCCCTGCTGCTCGCGGCGCTCTGGCTCCGTAGCGG CCTACTGCTGCTGGCGGCAGGCCTCGTTGCGCTGGTGGCGGGCGTGGTAGCCCTGTGGCGGCGGTTCGGCCTCAGCCGGC TCACGTACGAGCGGCACTTCCAGCAGAACCGGTGCTTCCCGGGCGAGCCGGTCACGCTCACGGTCACCGTGACCAACCGG AAGGTCCTGCCGCTGACCTACCTCGTCGTGGAGGAGTCGGTGCCCGTGGCGCTGGAGGTGGAGTCCCGGCGCCTGCACTT CCAGAGCCGGGCCCGCGGGAGGCTGCGGATGCGCTTCAGCCTCGGCTGGTACCAGCGGGTGGAGCGGCGCTTAACGGTGC GGGCCGCGCGGCGCGGGGCCTACCGCCTGGGGCCCGCGGTGGTGGCCGCGGGCGACCCGTTCGGGTGGGCCGAGCAGCGC ATGGAGGTCGCACCGTCCGACCTGTTGATCGTCTATCCGCGGGTGGTGCCGCTGGAGGAGGTCGGGCTGCCGGCGCAGCG ACCGTTCGGCGACCTGGCGTCCCGGGACCGGCTCTTCGCGGACCCCCTCCGGTTCGCGGGGGTACGCGAGTACCGGCCCG GGGACCCGCTGAACCAGGTGCACTGGAAGGCGACGGCCGCGACCGGCGAGCTGCAGGTGCGGCTGCTGGACCCGTCCGCC AGCCTGGGGCTGGCGGTCTTCCTGAACACGTGGTCGTACGAACGCTTCTGGGAGGGCGACGACGCGGACGCCCTGGAGGC TGGCGTGACCCTGGCGGCCTCGATCGTGGGCTGGGCCCACGAGCACGCCCTGCCGGTGGGCCTCTACGCCAACGGCCTCG TGTACGGGTGGGGCTTCAGCCTGCATCTGCCGCCGGCCCGCGGAGACGGCGTGCTGGTCCAGGCCCTGGAGGGGCTCGCC CGGCTGCAGACGGGATCGCCCCAGCCCCTCTGGGAGTTGATGGCCGCGGAAGTGCCGGCGCTGCCGTACGGCACCTCGCT GGTGGTGATCACCCGGCAGGTGGGCGTCGACCTGGCGGGCGCGGTCCTGCGCGCCCAGCGGTCCGGCCGCCCCGTGACCC TGGTGGTGACCGGGCCGGAGGCGGAGCCGGTGCCGGAGCTGCCGGGGGTCCGGGTCTACCGCGTGGGCGGAGAGGAGGGG CTGCATGGCGCGGTTCTGGCGGAGTAG
Upstream 100 bases:
>100_bases CCAGCTGCGGCTGCGGGGGCGCGGCGCCGCCGAAGTGCTGGATGGGATCCTCGCGGCCACGCCGGTCCCCGCGGAACCGG TGCCGAAGGGGGCGGTGTAG
Downstream 100 bases:
>100_bases GGGCCTCTGGGTCCGGTGGCTGTTGGCCGCGCTGGTGGAGACCGCGGCGGCCCTCCCGTGGATGCTTTTCCTCTACGCGG CGGACGGTGAGGCGGGCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MRLGSGSGLQWLGAAALLLAALWLRSGLLLLAAGLVALVAGVVALWRRFGLSRLTYERHFQQNRCFPGEPVTLTVTVTNR KVLPLTYLVVEESVPVALEVESRRLHFQSRARGRLRMRFSLGWYQRVERRLTVRAARRGAYRLGPAVVAAGDPFGWAEQR MEVAPSDLLIVYPRVVPLEEVGLPAQRPFGDLASRDRLFADPLRFAGVREYRPGDPLNQVHWKATAATGELQVRLLDPSA SLGLAVFLNTWSYERFWEGDDADALEAGVTLAASIVGWAHEHALPVGLYANGLVYGWGFSLHLPPARGDGVLVQALEGLA RLQTGSPQPLWELMAAEVPALPYGTSLVVITRQVGVDLAGAVLRAQRSGRPVTLVVTGPEAEPVPELPGVRVYRVGGEEG LHGAVLAE
Sequences:
>Translated_408_residues MRLGSGSGLQWLGAAALLLAALWLRSGLLLLAAGLVALVAGVVALWRRFGLSRLTYERHFQQNRCFPGEPVTLTVTVTNR KVLPLTYLVVEESVPVALEVESRRLHFQSRARGRLRMRFSLGWYQRVERRLTVRAARRGAYRLGPAVVAAGDPFGWAEQR MEVAPSDLLIVYPRVVPLEEVGLPAQRPFGDLASRDRLFADPLRFAGVREYRPGDPLNQVHWKATAATGELQVRLLDPSA SLGLAVFLNTWSYERFWEGDDADALEAGVTLAASIVGWAHEHALPVGLYANGLVYGWGFSLHLPPARGDGVLVQALEGLA RLQTGSPQPLWELMAAEVPALPYGTSLVVITRQVGVDLAGAVLRAQRSGRPVTLVVTGPEAEPVPELPGVRVYRVGGEEG LHGAVLAE >Mature_408_residues MRLGSGSGLQWLGAAALLLAALWLRSGLLLLAAGLVALVAGVVALWRRFGLSRLTYERHFQQNRCFPGEPVTLTVTVTNR KVLPLTYLVVEESVPVALEVESRRLHFQSRARGRLRMRFSLGWYQRVERRLTVRAARRGAYRLGPAVVAAGDPFGWAEQR MEVAPSDLLIVYPRVVPLEEVGLPAQRPFGDLASRDRLFADPLRFAGVREYRPGDPLNQVHWKATAATGELQVRLLDPSA SLGLAVFLNTWSYERFWEGDDADALEAGVTLAASIVGWAHEHALPVGLYANGLVYGWGFSLHLPPARGDGVLVQALEGLA RLQTGSPQPLWELMAAEVPALPYGTSLVVITRQVGVDLAGAVLRAQRSGRPVTLVVTGPEAEPVPELPGVRVYRVGGEEG LHGAVLAE
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44424; Mature: 44424
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLGSGSGLQWLGAAALLLAALWLRSGLLLLAAGLVALVAGVVALWRRFGLSRLTYERHF CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH QQNRCFPGEPVTLTVTVTNRKVLPLTYLVVEESVPVALEVESRRLHFQSRARGRLRMRFS HHCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCEEEEECCHHHHHHHCCCCEEEEEEE LGWYQRVERRLTVRAARRGAYRLGPAVVAAGDPFGWAEQRMEVAPSDLLIVYPRVVPLEE CHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHH VGLPAQRPFGDLASRDRLFADPLRFAGVREYRPGDPLNQVHWKATAATGELQVRLLDPSA CCCCCCCCCCHHHHCCCHHHCHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCC SLGLAVFLNTWSYERFWEGDDADALEAGVTLAASIVGWAHEHALPVGLYANGLVYGWGFS CCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECEE LHLPPARGDGVLVQALEGLARLQTGSPQPLWELMAAEVPALPYGTSLVVITRQVGVDLAG EECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHH AVLRAQRSGRPVTLVVTGPEAEPVPELPGVRVYRVGGEEGLHGAVLAE HHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEECC >Mature Secondary Structure MRLGSGSGLQWLGAAALLLAALWLRSGLLLLAAGLVALVAGVVALWRRFGLSRLTYERHF CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH QQNRCFPGEPVTLTVTVTNRKVLPLTYLVVEESVPVALEVESRRLHFQSRARGRLRMRFS HHCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCEEEEECCHHHHHHHCCCCEEEEEEE LGWYQRVERRLTVRAARRGAYRLGPAVVAAGDPFGWAEQRMEVAPSDLLIVYPRVVPLEE CHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHH VGLPAQRPFGDLASRDRLFADPLRFAGVREYRPGDPLNQVHWKATAATGELQVRLLDPSA CCCCCCCCCCHHHHCCCHHHCHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCC SLGLAVFLNTWSYERFWEGDDADALEAGVTLAASIVGWAHEHALPVGLYANGLVYGWGFS CCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECEE LHLPPARGDGVLVQALEGLARLQTGSPQPLWELMAAEVPALPYGTSLVVITRQVGVDLAG EECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHH AVLRAQRSGRPVTLVVTGPEAEPVPELPGVRVYRVGGEEGLHGAVLAE HHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA