| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892906
Identifier: 51892906
GI number: 51892906
Start: 1913103
End: 1914449
Strand: Reverse
Name: 51892906
Synonym: STH1768
Alternate gene names: NA
Gene position: 1914449-1913103 (Counterclockwise)
Preceding gene: 51892907
Following gene: 51892905
Centisome position: 53.68
GC content: 74.09
Gene sequence:
>1347_bases TTGGCCGCGCTGGTGGAGACCGCGGCGGCCCTCCCGTGGATGCTTTTCCTCTACGCGGCGGACGGTGAGGCGGGCTGGTT CGAGGCTGTGCCCGGTGCGTGGCTGCCGCTCGCCGTCTTCCTGACCGCGGCGGTGTGGGAGTCGGGAAGCCGGGGCGACG CGCGCCCCGCGCGCGTCGGGGCCCTGGTGGCGGGCGCCGCCCTGGCCTACCTGGCGGCGTACGCCCTCCTGCCGGCGCCG CTGCGGACCGGGGTGTTCGGCCTCAACCCGGCGCTGGCCTTCGTGCCCGTGGCCGTTTACCTCTGGTACGCCGGGGCCAG CTGCGCCCTGGAGGGGCTGGAGTACGGCCGCCTCTTCGAGCGGGCGTGGCGGCTGTTCGGCGGGCAGCTGGCCGGCATCG TGTGTCTCCTGCTGCTGGGCGAGGCGCGGTCCGGCCCGGTGCAACTGGTACTGGGATGGTCCGTGGTGCTGCTGTTCGGG GCCGGCCTCTCGCTGTTGATCCTGACCCGGGAGCGGGCTCTGCTGGGCGCCTTCGATGCGGAGGAGCAGGCCGCGGAGCC CACATCCCCCGCTGTGACCGGCTTCGTGCTGGCCCTGCTCGCCGGGACGGTCGCGGCGTCCGCTGTGCTGACGGTGGACC GGGTGGCGACGCTCCTGCGCGCGGTCGGCCGGCTCGTGGCGCCGGTCTACAACGTCCTGGTCCAGGTCGCAGCGTATCTC GCCATGGGCGTCGCCATGCTCCTGGAGCCTCTGTTCAACCTGCTGAAGTGGCTGGCATCCCAGCAGGAGCCGACGGAGCA GGGGGGAGGCGAGGACGTTGCGCCGGGCCCGCCCGACCTGCCCCCGGATGCCGGGGCGCAGCTGGATCTGGAGCCCGTGC TGAAGGCCGGGTTGATCCTGGTGGCGGTAGCGCTGGCGGCCCTGCTGCTGTGGCGCATGAGCGCCGTGCGGCGGCGCACG TCCGAGGTGGACGAGGAGCGGACCAACCTCGGCTTCTGGGCCTCGCTCTGGCAGGACCTGCGGGGGCTGCTGCAAGCGCG CCGAACCGCAGGGGCGGTGGGAGACGGCGCCGGGGAGGAACCGGTTCCGCCCGGCAGCGCCCGGGAGCTTTACCGGCGGC TGCAGCGGTGGGGTTCCTCGCGGGTGCGCCCCCGGCGGCCGGCCGAGACCCCCAACGCGTATCGGTCGGCGCTGGCCGGC GCGCAGCCTCGGGCTGCCGACGCGGTCGACGCCGTGACCGCGGTCTACAACCAGGAGCGCTACGGCAGCCGGCCGCCGGA TGCGGAGACGGTTGCAGAGGCCGCAGCGCTTTGGGAGGCCAGTTGCGAACGGGACTTCACTGTGTAA
Upstream 100 bases:
>100_bases GTGCCGGAGCTGCCGGGGGTCCGGGTCTACCGCGTGGGCGGAGAGGAGGGGCTGCATGGCGCGGTTCTGGCGGAGTAGGG GCCTCTGGGTCCGGTGGCTG
Downstream 100 bases:
>100_bases TCGCCTTAACTTATAATGAATGGGAAGGCAACATGCGCCTTCCCATTCTTTGTGCGAATCGGATCTCGCCGGCGATGCGA GGGCCGACCCGGAGGGGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MAALVETAAALPWMLFLYAADGEAGWFEAVPGAWLPLAVFLTAAVWESGSRGDARPARVGALVAGAALAYLAAYALLPAP LRTGVFGLNPALAFVPVAVYLWYAGASCALEGLEYGRLFERAWRLFGGQLAGIVCLLLLGEARSGPVQLVLGWSVVLLFG AGLSLLILTRERALLGAFDAEEQAAEPTSPAVTGFVLALLAGTVAASAVLTVDRVATLLRAVGRLVAPVYNVLVQVAAYL AMGVAMLLEPLFNLLKWLASQQEPTEQGGGEDVAPGPPDLPPDAGAQLDLEPVLKAGLILVAVALAALLLWRMSAVRRRT SEVDEERTNLGFWASLWQDLRGLLQARRTAGAVGDGAGEEPVPPGSARELYRRLQRWGSSRVRPRRPAETPNAYRSALAG AQPRAADAVDAVTAVYNQERYGSRPPDAETVAEAAALWEASCERDFTV
Sequences:
>Translated_448_residues MAALVETAAALPWMLFLYAADGEAGWFEAVPGAWLPLAVFLTAAVWESGSRGDARPARVGALVAGAALAYLAAYALLPAP LRTGVFGLNPALAFVPVAVYLWYAGASCALEGLEYGRLFERAWRLFGGQLAGIVCLLLLGEARSGPVQLVLGWSVVLLFG AGLSLLILTRERALLGAFDAEEQAAEPTSPAVTGFVLALLAGTVAASAVLTVDRVATLLRAVGRLVAPVYNVLVQVAAYL AMGVAMLLEPLFNLLKWLASQQEPTEQGGGEDVAPGPPDLPPDAGAQLDLEPVLKAGLILVAVALAALLLWRMSAVRRRT SEVDEERTNLGFWASLWQDLRGLLQARRTAGAVGDGAGEEPVPPGSARELYRRLQRWGSSRVRPRRPAETPNAYRSALAG AQPRAADAVDAVTAVYNQERYGSRPPDAETVAEAAALWEASCERDFTV >Mature_447_residues AALVETAAALPWMLFLYAADGEAGWFEAVPGAWLPLAVFLTAAVWESGSRGDARPARVGALVAGAALAYLAAYALLPAPL RTGVFGLNPALAFVPVAVYLWYAGASCALEGLEYGRLFERAWRLFGGQLAGIVCLLLLGEARSGPVQLVLGWSVVLLFGA GLSLLILTRERALLGAFDAEEQAAEPTSPAVTGFVLALLAGTVAASAVLTVDRVATLLRAVGRLVAPVYNVLVQVAAYLA MGVAMLLEPLFNLLKWLASQQEPTEQGGGEDVAPGPPDLPPDAGAQLDLEPVLKAGLILVAVALAALLLWRMSAVRRRTS EVDEERTNLGFWASLWQDLRGLLQARRTAGAVGDGAGEEPVPPGSARELYRRLQRWGSSRVRPRRPAETPNAYRSALAGA QPRAADAVDAVTAVYNQERYGSRPPDAETVAEAAALWEASCERDFTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47387; Mature: 47256
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00296 CHAPERONINS_CPN60
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALVETAAALPWMLFLYAADGEAGWFEAVPGAWLPLAVFLTAAVWESGSRGDARPARVG CCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH ALVAGAALAYLAAYALLPAPLRTGVFGLNPALAFVPVAVYLWYAGASCALEGLEYGRLFE HHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH RAWRLFGGQLAGIVCLLLLGEARSGPVQLVLGWSVVLLFGAGLSLLILTRERALLGAFDA HHHHHHCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC EEQAAEPTSPAVTGFVLALLAGTVAASAVLTVDRVATLLRAVGRLVAPVYNVLVQVAAYL HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMGVAMLLEPLFNLLKWLASQQEPTEQGGGEDVAPGPPDLPPDAGAQLDLEPVLKAGLIL HHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH VAVALAALLLWRMSAVRRRTSEVDEERTNLGFWASLWQDLRGLLQARRTAGAVGDGAGEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PVPPGSARELYRRLQRWGSSRVRPRRPAETPNAYRSALAGAQPRAADAVDAVTAVYNQER CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH YGSRPPDAETVAEAAALWEASCERDFTV CCCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AALVETAAALPWMLFLYAADGEAGWFEAVPGAWLPLAVFLTAAVWESGSRGDARPARVG CHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH ALVAGAALAYLAAYALLPAPLRTGVFGLNPALAFVPVAVYLWYAGASCALEGLEYGRLFE HHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH RAWRLFGGQLAGIVCLLLLGEARSGPVQLVLGWSVVLLFGAGLSLLILTRERALLGAFDA HHHHHHCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC EEQAAEPTSPAVTGFVLALLAGTVAASAVLTVDRVATLLRAVGRLVAPVYNVLVQVAAYL HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMGVAMLLEPLFNLLKWLASQQEPTEQGGGEDVAPGPPDLPPDAGAQLDLEPVLKAGLIL HHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH VAVALAALLLWRMSAVRRRTSEVDEERTNLGFWASLWQDLRGLLQARRTAGAVGDGAGEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PVPPGSARELYRRLQRWGSSRVRPRRPAETPNAYRSALAGAQPRAADAVDAVTAVYNQER CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH YGSRPPDAETVAEAAALWEASCERDFTV CCCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA