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The map label for this gene is rbcR [H]

Identifier: 51892905

GI number: 51892905

Start: 1912093

End: 1913028

Strand: Reverse

Name: rbcR [H]

Synonym: STH1767

Alternate gene names: 51892905

Gene position: 1913028-1912093 (Counterclockwise)

Preceding gene: 51892906

Following gene: 51892903

Centisome position: 53.64

GC content: 68.59

Gene sequence:

>936_bases
ATGCGAGGGCCGACCCGGAGGGGGAGTTCGATGCTGCTGCAGCACCTGACCACCTTCTGCCGCGTCGTGGAGGAAGGGTC
GTTCACCCGCGCCGCGCAAGTGCTGAACCTGACCCAGCCGTCGGTCACCAAGCAGGTGGGGGCCCTGGAAGACTACCTGC
AGGTGCAGCTGTTCACCCGGCAAGGCAAGCGGGTCCACCTCACCCCGGTGGGGGAGCTGGTATACGACTACGCCCGCCAG
GTGATCCACCTGGTGCAGCGGTGCGAGGAGGCGGTACGGGAGTACCGCTCGCCCGGCAGCGGCAGCGTGACGGTGGGTTG
CGTGCACACGATCGGCCTGTTTACCCTGCCGGAGCTCCTGGCGGCGTACGTGCGGGAGCACCCGCGGGTGAAGATCAACG
TGAAGACCGGGAACAACCGGGAGACGGTGACGATGCTCCTGCACGGCGAGGTGGACGTGGGGCTCGTCACGACGCCGCAG
GTACACGAGCGCATCGAGGTGGTGCCGCTGTTTGAGGATCCGCTGGTGGTGGTCGCAGGCCCCAGCTTCGCCGCCGATCT
GCCGCCGGTGGTCAGCAACGCCGATCTGGCGCAGCTGCCGTTCATCGGCTACGTGCGCGGCGCCCGCTTCCGTATGACCA
CGGACCAGGTGCTGGAGGAGATGGGCATCCAGCCGCAGTTCGTGATGGAGTTCGACAACCACGAGGCGATCAAGACGATG
GTCGCGCTGGGCTTCGGGATCGCCCTGGAGCCGGTGTCGGCGGTGCAGCGGGAGCTGATCTCGGGGCAGCTGGTGCGGCT
GAACGTGCCGGGGCTGCCGCGCCTCAGCCGGACCACGTCGCTGATCCTGCGGCGGGGCGAGCGGCGCAGCGAGGCGGTGC
GGGCGTTCCTGTCGCTGCTGGAGCAGCGGTACAACGTCACGATTCCGACGCGGTAG

Upstream 100 bases:

>100_bases
GTTGCGAACGGGACTTCACTGTGTAATCGCCTTAACTTATAATGAATGGGAAGGCAACATGCGCCTTCCCATTCTTTGTG
CGAATCGGATCTCGCCGGCG

Downstream 100 bases:

>100_bases
GACGGACTTGGGGGTACAACGTAGCCGTGCATCTGGCGGCCGCCGGGCCCTGCGCCCGGCGGCCGCCATGCGCAGGACCG
CCCGTGTCTTCCACCTGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRGPTRRGSSMLLQHLTTFCRVVEEGSFTRAAQVLNLTQPSVTKQVGALEDYLQVQLFTRQGKRVHLTPVGELVYDYARQ
VIHLVQRCEEAVREYRSPGSGSVTVGCVHTIGLFTLPELLAAYVREHPRVKINVKTGNNRETVTMLLHGEVDVGLVTTPQ
VHERIEVVPLFEDPLVVVAGPSFAADLPPVVSNADLAQLPFIGYVRGARFRMTTDQVLEEMGIQPQFVMEFDNHEAIKTM
VALGFGIALEPVSAVQRELISGQLVRLNVPGLPRLSRTTSLILRRGERRSEAVRAFLSLLEQRYNVTIPTR

Sequences:

>Translated_311_residues
MRGPTRRGSSMLLQHLTTFCRVVEEGSFTRAAQVLNLTQPSVTKQVGALEDYLQVQLFTRQGKRVHLTPVGELVYDYARQ
VIHLVQRCEEAVREYRSPGSGSVTVGCVHTIGLFTLPELLAAYVREHPRVKINVKTGNNRETVTMLLHGEVDVGLVTTPQ
VHERIEVVPLFEDPLVVVAGPSFAADLPPVVSNADLAQLPFIGYVRGARFRMTTDQVLEEMGIQPQFVMEFDNHEAIKTM
VALGFGIALEPVSAVQRELISGQLVRLNVPGLPRLSRTTSLILRRGERRSEAVRAFLSLLEQRYNVTIPTR
>Mature_311_residues
MRGPTRRGSSMLLQHLTTFCRVVEEGSFTRAAQVLNLTQPSVTKQVGALEDYLQVQLFTRQGKRVHLTPVGELVYDYARQ
VIHLVQRCEEAVREYRSPGSGSVTVGCVHTIGLFTLPELLAAYVREHPRVKINVKTGNNRETVTMLLHGEVDVGLVTTPQ
VHERIEVVPLFEDPLVVVAGPSFAADLPPVVSNADLAQLPFIGYVRGARFRMTTDQVLEEMGIQPQFVMEFDNHEAIKTM
VALGFGIALEPVSAVQRELISGQLVRLNVPGLPRLSRTTSLILRRGERRSEAVRAFLSLLEQRYNVTIPTR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=33.2179930795848, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787530, Length=297, Percent_Identity=27.2727272727273, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=26.4604810996564, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787806, Length=295, Percent_Identity=24.406779661017, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=24.9134948096886, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082132, Length=296, Percent_Identity=29.0540540540541, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1788296, Length=290, Percent_Identity=27.2413793103448, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=26.962457337884, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787879, Length=244, Percent_Identity=25.4098360655738, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=27.5720164609054, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789639, Length=256, Percent_Identity=29.296875, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789204, Length=291, Percent_Identity=26.8041237113402, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788887, Length=303, Percent_Identity=26.4026402640264, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787601, Length=237, Percent_Identity=24.0506329113924, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081904, Length=265, Percent_Identity=25.6603773584906, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=23.5494880546075, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788748, Length=304, Percent_Identity=25.3289473684211, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788297, Length=267, Percent_Identity=25.4681647940075, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI2367136, Length=279, Percent_Identity=23.2974910394265, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789506, Length=179, Percent_Identity=27.3743016759777, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790262, Length=286, Percent_Identity=25.5244755244755, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790783, Length=269, Percent_Identity=26.0223048327138, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786202, Length=151, Percent_Identity=29.8013245033113, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=24.5614035087719, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34673; Mature: 34673

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGPTRRGSSMLLQHLTTFCRVVEEGSFTRAAQVLNLTQPSVTKQVGALEDYLQVQLFTR
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEC
QGKRVHLTPVGELVYDYARQVIHLVQRCEEAVREYRSPGSGSVTVGCVHTIGLFTLPELL
CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHH
AAYVREHPRVKINVKTGNNRETVTMLLHGEVDVGLVTTPQVHERIEVVPLFEDPLVVVAG
HHHHHHCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCHHHCCEEEEEECCCCEEEEEC
PSFAADLPPVVSNADLAQLPFIGYVRGARFRMTTDQVLEEMGIQPQFVMEFDNHEAIKTM
CCCCCCCCCCCCCCCHHHCCCHHHHCCCEEEECHHHHHHHHCCCCEEEEEECCHHHHHHH
VALGFGIALEPVSAVQRELISGQLVRLNVPGLPRLSRTTSLILRRGERRSEAVRAFLSLL
HHHHCCHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
EQRYNVTIPTR
HHHCCCCCCCC
>Mature Secondary Structure
MRGPTRRGSSMLLQHLTTFCRVVEEGSFTRAAQVLNLTQPSVTKQVGALEDYLQVQLFTR
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEC
QGKRVHLTPVGELVYDYARQVIHLVQRCEEAVREYRSPGSGSVTVGCVHTIGLFTLPELL
CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHH
AAYVREHPRVKINVKTGNNRETVTMLLHGEVDVGLVTTPQVHERIEVVPLFEDPLVVVAG
HHHHHHCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCHHHCCEEEEEECCCCEEEEEC
PSFAADLPPVVSNADLAQLPFIGYVRGARFRMTTDQVLEEMGIQPQFVMEFDNHEAIKTM
CCCCCCCCCCCCCCCHHHCCCHHHHCCCEEEECHHHHHHHHCCCCEEEEEECCHHHHHHH
VALGFGIALEPVSAVQRELISGQLVRLNVPGLPRLSRTTSLILRRGERRSEAVRAFLSLL
HHHHCCHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
EQRYNVTIPTR
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]