Click here to switch to the map view.

The map label for this gene is rbpE [H]

Identifier: 51892903

GI number: 51892903

Start: 1910516

End: 1910800

Strand: Reverse

Name: rbpE [H]

Synonym: STH1765

Alternate gene names: 51892903

Gene position: 1910800-1910516 (Counterclockwise)

Preceding gene: 51892905

Following gene: 51892902

Centisome position: 53.58

GC content: 67.37

Gene sequence:

>285_bases
ATGGGAGAGAGAATGCGAATGACCAAGACCCTGTACTTCGGCAACCTTCCGTGGGCCGTCACGCCGGAGGATCTTCAGAA
CGCCGTGTCCCAGCATGCTGAGGTGCTCGGCGCCCGAATCGCTACCGATCGGGAGACGGGCCGCAGCCGCGGCTTCGGCT
TCGTGGAGGTTCCGGCCGATCAGGCTCAGGCCGTCATCGACGCCCTGAACGGCGCCGAGTGGGCCGGCCGTCAGCTCACC
GTCAACGAGGCCCAGCCTCGTCCGGAGCGTGGCCCTCGCCGCTAA

Upstream 100 bases:

>100_bases
ATTGGTTTGCGGCTTGGTGAGCGGTGCGCTGGTTTGCCGAATACGGGCGAATTCCTCGCGTCTCCCTCCCGAACGCGATC
CAAAAAATATCTCCAGATGG

Downstream 100 bases:

>100_bases
ACAGCGGAGGTGACAACAGCGCCCGGTGCATGTGCACCGGGCGTTTTGCCGCGTCTTGGGGCCGTTGCCACGGGCGTCCG
CCATAGGGTAGAATGACGGT

Product: glycine-rich RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MGERMRMTKTLYFGNLPWAVTPEDLQNAVSQHAEVLGARIATDRETGRSRGFGFVEVPADQAQAVIDALNGAEWAGRQLT
VNEAQPRPERGPRR

Sequences:

>Translated_94_residues
MGERMRMTKTLYFGNLPWAVTPEDLQNAVSQHAEVLGARIATDRETGRSRGFGFVEVPADQAQAVIDALNGAEWAGRQLT
VNEAQPRPERGPRR
>Mature_93_residues
GERMRMTKTLYFGNLPWAVTPEDLQNAVSQHAEVLGARIATDRETGRSRGFGFVEVPADQAQAVIDALNGAEWAGRQLTV
NEAQPRPERGPRR

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=48.1012658227848, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=82, Percent_Identity=42.6829268292683, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10420; Mature: 10289

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGERMRMTKTLYFGNLPWAVTPEDLQNAVSQHAEVLGARIATDRETGRSRGFGFVEVPAD
CCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHH
QAQAVIDALNGAEWAGRQLTVNEAQPRPERGPRR
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
GERMRMTKTLYFGNLPWAVTPEDLQNAVSQHAEVLGARIATDRETGRSRGFGFVEVPAD
CCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHH
QAQAVIDALNGAEWAGRQLTVNEAQPRPERGPRR
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]