| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892894
Identifier: 51892894
GI number: 51892894
Start: 1900640
End: 1901743
Strand: Reverse
Name: 51892894
Synonym: STH1756
Alternate gene names: NA
Gene position: 1901743-1900640 (Counterclockwise)
Preceding gene: 51892895
Following gene: 51892893
Centisome position: 53.33
GC content: 71.74
Gene sequence:
>1104_bases ATGCGTCGCTTTTTCGTTGTGCTGCTGATGCTGATCCTGATCCCGACGGCCGTACCCGGCACGGCCCTGGCCGAGGAGCC GGTGCGGCTGTTCGTCAACGGTTCGCAGGTTGTCCCGGACGTGGCGCCGGTCATCGTGTCCGACCGCACGCTGGTGCCCG TCCGCTTCCTGGCCGAGCCGCTGGGGTTCGCCGTGGAGTGGGACGGGGCGACGGGAACGGTGACGCTCTCCGGAGCCCGG GTGATCCGCCTCGCCGTCGGCCGGCCCGAGGCCATCGTGGACGGAACCGTGGTCGCCCTGGACGTGGCGCCGGTCAACGT CGACGGCCGGGTCATGGTCCCGTTGCGCTTCGTGGCCGAACAGATGGGCGCCGCGGTGGAGTGGGATCCGCAGAACCGGG TGGTGACCGTTACCGCCGCCCGGATCCTGCCGGAGGGCCAGGTGGGCGGTGACCTGGCCCTTGTGGGGAACGTGGAGGCC CTGGGCGCGTGGGCCGAGGGGCACACGACGGGTCAGTTCAGGCTCTCCGCCGTCGCGGGCGTGCTGAGCATGGACTACAC CTTTGCGCTGGATGGTTATCGGGAGGGCGACGACCTGCTCGTCTACCTGACCGGCGCGGGCCCGGGGCTGGACTACCGGT CGGCCCTTGCCGTGCGCGCCGGCAAGGTCTGGCGGCTCGGCCCGGGCGGCACGTGGGTGCGGCGGCCGGAGGAGGATGCG GCGTTCGGTCCGGACGGCCTGCCCGGGTGGGGAGGGGATCTCCCGGCCGAGGGCGGCCTCTTCGACCCCGACACCACGGA ACTGGCCGGCGCCCGGATCCTCCGGGAGGAGAGGACGCTGGAAGGCGTGACCTACGACGTGGTCGTGGTCGAGTGGGATC AGGCGGCACTCTCGCCGCTGTTCGCGGAGTTTCCGCCGACGGTCGGGGACGCGTCGCTGCTCCTCACCGTGTACGCCCTA CCGGACACCGGGGGGCCTGTGCGGGTCGACCTGAGCATGCACGCCGCAGACGCCACCGGGGTGACGGTGGACCTCAGCGG ATCCCTGGCCGTGAAGCCGCTGGAAGGCGCGATCCCGTTCCCGCCGGAGATTCTGTCCGAATGA
Upstream 100 bases:
>100_bases TCAGCTGCAGGCCAAGGCGAAGGAGAACCGATAGGAATCGCGGCGCAGGCGGCGAATACCCCTTCCTTGCCAAGTTGCGT ACGAATGAGGGGGACTCCGC
Downstream 100 bases:
>100_bases CGGGCGCGAAGCCGCCCCCCGATGGATGCGGGGGGCGGCTTTCGGTGTGCCCGGCATGGGCGCTGACTTGGCGGTGAAAG TCCGCTACGGGCGAGGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Copper Amine Oxidase Domain-Containing Protein; Copper Amine Oxidase-Like Protein; N-Acetylmuramoyl-L-Alanine Amidase; Copper Amine Oxidase N- Domain Family; Cell Wall Hydrolase/Autolysin; Copper Amine Oxidase-Like; Copper Amine Oxidase N- Domain Protein; SCP-Like Extracellular Protease; Peptidyl-Prolyl Cis-Trans Isomerase Cyclophilin-Type; SpoIID/LytB Domain Protein; Peptidase; Copper Amine Oxidase N-Terminal Domain Family; Minor Extracellular Protease; Glycosyl Hydrolase; Protease; Amylopullulanase; D-Alanyl-D-Alanine Carboxypeptidase-Like Protein; Papain Family Cysteine Protease; D-Alanyl-D-Alanine Carboxypeptidase; Secreted Protein
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MRRFFVVLLMLILIPTAVPGTALAEEPVRLFVNGSQVVPDVAPVIVSDRTLVPVRFLAEPLGFAVEWDGATGTVTLSGAR VIRLAVGRPEAIVDGTVVALDVAPVNVDGRVMVPLRFVAEQMGAAVEWDPQNRVVTVTAARILPEGQVGGDLALVGNVEA LGAWAEGHTTGQFRLSAVAGVLSMDYTFALDGYREGDDLLVYLTGAGPGLDYRSALAVRAGKVWRLGPGGTWVRRPEEDA AFGPDGLPGWGGDLPAEGGLFDPDTTELAGARILREERTLEGVTYDVVVVEWDQAALSPLFAEFPPTVGDASLLLTVYAL PDTGGPVRVDLSMHAADATGVTVDLSGSLAVKPLEGAIPFPPEILSE
Sequences:
>Translated_367_residues MRRFFVVLLMLILIPTAVPGTALAEEPVRLFVNGSQVVPDVAPVIVSDRTLVPVRFLAEPLGFAVEWDGATGTVTLSGAR VIRLAVGRPEAIVDGTVVALDVAPVNVDGRVMVPLRFVAEQMGAAVEWDPQNRVVTVTAARILPEGQVGGDLALVGNVEA LGAWAEGHTTGQFRLSAVAGVLSMDYTFALDGYREGDDLLVYLTGAGPGLDYRSALAVRAGKVWRLGPGGTWVRRPEEDA AFGPDGLPGWGGDLPAEGGLFDPDTTELAGARILREERTLEGVTYDVVVVEWDQAALSPLFAEFPPTVGDASLLLTVYAL PDTGGPVRVDLSMHAADATGVTVDLSGSLAVKPLEGAIPFPPEILSE >Mature_367_residues MRRFFVVLLMLILIPTAVPGTALAEEPVRLFVNGSQVVPDVAPVIVSDRTLVPVRFLAEPLGFAVEWDGATGTVTLSGAR VIRLAVGRPEAIVDGTVVALDVAPVNVDGRVMVPLRFVAEQMGAAVEWDPQNRVVTVTAARILPEGQVGGDLALVGNVEA LGAWAEGHTTGQFRLSAVAGVLSMDYTFALDGYREGDDLLVYLTGAGPGLDYRSALAVRAGKVWRLGPGGTWVRRPEEDA AFGPDGLPGWGGDLPAEGGLFDPDTTELAGARILREERTLEGVTYDVVVVEWDQAALSPLFAEFPPTVGDASLLLTVYAL PDTGGPVRVDLSMHAADATGVTVDLSGSLAVKPLEGAIPFPPEILSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38580; Mature: 38580
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRFFVVLLMLILIPTAVPGTALAEEPVRLFVNGSQVVPDVAPVIVSDRTLVPVRFLAEP CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCEEEHHHHHHHH LGFAVEWDGATGTVTLSGARVIRLAVGRPEAIVDGTVVALDVAPVNVDGRVMVPLRFVAE CCEEEEECCCCEEEEECCCEEEEEECCCCCEEECCEEEEEEEEEECCCCEEEEHHHHHHH QMGAAVEWDPQNRVVTVTAARILPEGQVGGDLALVGNVEALGAWAEGHTTGQFRLSAVAG HHCCEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECHHHEEEECCCCCCCEEEEEHHHH VLSMDYTFALDGYREGDDLLVYLTGAGPGLDYRSALAVRAGKVWRLGPGGTWVRRPEEDA HHHCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHEEECCCEEEECCCCCCCCCCCCCC AFGPDGLPGWGGDLPAEGGLFDPDTTELAGARILREERTLEGVTYDVVVVEWDQAALSPL CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHH FAEFPPTVGDASLLLTVYALPDTGGPVRVDLSMHAADATGVTVDLSGSLAVKPLEGAIPF HHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCCCCCC PPEILSE CHHHHCC >Mature Secondary Structure MRRFFVVLLMLILIPTAVPGTALAEEPVRLFVNGSQVVPDVAPVIVSDRTLVPVRFLAEP CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCEEEHHHHHHHH LGFAVEWDGATGTVTLSGARVIRLAVGRPEAIVDGTVVALDVAPVNVDGRVMVPLRFVAE CCEEEEECCCCEEEEECCCEEEEEECCCCCEEECCEEEEEEEEEECCCCEEEEHHHHHHH QMGAAVEWDPQNRVVTVTAARILPEGQVGGDLALVGNVEALGAWAEGHTTGQFRLSAVAG HHCCEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECHHHEEEECCCCCCCEEEEEHHHH VLSMDYTFALDGYREGDDLLVYLTGAGPGLDYRSALAVRAGKVWRLGPGGTWVRRPEEDA HHHCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHEEECCCEEEECCCCCCCCCCCCCC AFGPDGLPGWGGDLPAEGGLFDPDTTELAGARILREERTLEGVTYDVVVVEWDQAALSPL CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHH FAEFPPTVGDASLLLTVYALPDTGGPVRVDLSMHAADATGVTVDLSGSLAVKPLEGAIPF HHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCCCCCC PPEILSE CHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA