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The map label for this gene is ykfC [H]

Identifier: 51892893

GI number: 51892893

Start: 1899230

End: 1900039

Strand: Reverse

Name: ykfC [H]

Synonym: STH1755

Alternate gene names: 51892893

Gene position: 1900039-1899230 (Counterclockwise)

Preceding gene: 51892894

Following gene: 51892892

Centisome position: 53.28

GC content: 64.81

Gene sequence:

>810_bases
ATGGAGCAGGTGGTGGCCAGGGAGAACATGCTGGCCGCCCTGAAACGGGTGGAGCGGAACGGAGGCGCTCCCGGCGTGGA
CGGTGTCCCCACCGAACGGCTGCGGGACCAGATTCGCGTGGAGTGGAGCCGCATCCGTGAGGAACTGCTCCAGGGGACCT
ACAGACCGCAGCCAGTCCGCCGGGTCGAAATCCCGAAACCGGGCGGCGGCAAGCGGATGCTGGGGATTCCCACCGTGATG
GACCGCCTGATCCAACAGGCACTCCTGCAAGTACTGACGCCGATCTTTGACCCGACATTCTCCGAATCCAGCTACGGCTT
TCGGCCGGGGCGGCGGGGTCATGATGCGGTCAGGAAGGCACGTCAGTACGTGGAGGAAGGGTACGACTGGGTCGTGGACA
TGGACCTGGAGAAGTTCTTCGACCGGGTCAACCACGACGTGCTGATGGCCCGCGTGGCGCGGCGGGTAACGGATAAGCGT
GTGCTGCGGCTGATCCGGCGGTACTTACAGGCCGGGGTCATGCTGAACGGGGTAGTCGTGGCGACGGAGGAAGGGACGCC
GCAGGGCGGTCCGCTGAGTCCGCTGCTGGCGAACATCCTGCTGGATGACCTCGACAAGGAGCTGGAGCGCCGTGGCCACC
ACTTTGTCCGGTACGCCGATGACTGCAACATCTACGTCCGCAGCAAACGGGCGGGAGAACGGGTCTACAGGAGCGTGCGC
CACTTCCTGCAGGAGCGGTTACGGCTTGAAGGTCAACGAGGAGAAGAGCGCAGTGGACCGGCCGTGGAAGCGGCAGTTCC
TCGGGTTTAG

Upstream 100 bases:

>100_bases
CTCGCCGGAGGTAGCGGTGAAGCCGCAAGGGACGGCGAGAGGGCGGAGTGGGCAGCCGGCACAAGACGGAACGTCACCCC
GCGGGGAGCACAGCAACCTG

Downstream 100 bases:

>100_bases
CTTCTACAAGCACCGGGGAGTGCGCATCCGGCTGGCCCCGAAGAGCCTGAAACGCGTGAAGGACAAGCTCCGCACGCTGA
CGGACCGCAACCGCAGCCAG

Product: group II intron-encoding maturase variant

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLEGQRGEERSGPAVEAAVPRV

Sequences:

>Translated_269_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLEGQRGEERSGPAVEAAVPRV
>Mature_269_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLEGQRGEERSGPAVEAAVPRV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=222, Percent_Identity=31.5315315315315, Blast_Score=114, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6226520, Length=226, Percent_Identity=29.646017699115, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 30872; Mature: 30872

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVV
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEE
ATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
HFLQERLRLEGQRGEERSGPAVEAAVPRV
HHHHHHHHCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVV
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEE
ATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
HFLQERLRLEGQRGEERSGPAVEAAVPRV
HHHHHHHHCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]