| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892840
Identifier: 51892840
GI number: 51892840
Start: 1849439
End: 1850557
Strand: Reverse
Name: 51892840
Synonym: STH1702
Alternate gene names: NA
Gene position: 1850557-1849439 (Counterclockwise)
Preceding gene: 51892846
Following gene: 51892839
Centisome position: 51.89
GC content: 67.56
Gene sequence:
>1119_bases TTGAGTTCTGCCGAAGCAACCAGCCCCTACAGCGCAAGCAGTATCATCATCATCCCGGCCCTGGAGCCACCGCCCGCCCT GGTGAAGTACGTACAGGCTCTGCTGGAGCGCGGGTTTCCGCGGATCGTCATCGTCGACGACGGAAGCAGCCCCGCCTGCC GCTCCATCTTTGACAGCCTGGCCCGAATGAGCGGATGCGTGGTGCTGCGGCACGAGGTGAACCGCGGCAAGGGAGCCGCC CTGAAGACGGCCCTGCGCCACTGCTTGCAGCAGGGGTGGCAACAGATCTACCGCCGCGTCATCATGGTCGACGCCGACGG GCAGCACGCGGTGGAGGACGTCTGCGGCATGGCCAGGGCCTCCCACGAGCACCCCGACGCCTACGTGCTCGGCATCCGTG ACTTCAACCAGAAGAGCGTGCCCGCCCGCAGCCGCTTCGGCAACCGGCTGACCAGCGGCGCCTTCCACCTCTTCTACGGC CGCTACCTGCGGGACACCCAGACCGGGCTCAGGGCCCTGCCCATCAGCCTGTGGGAGTGGGCGACCCAGATCGCGGGCGA GCGCTTCGAGTACGAGACCAACTGCCTGGTGCAGGCCATGAAGCAGGGCATCCCCATGGCGGAGATGCCCATCCGGACGC TCTACTTCAACAAGAACGAGAACACGCACTACCGCACGCTCCGGGACTCGTGGCCCATTTTCAAGATCCTGATCCGCCAC CTGGGCGCCTATGCGCTGGCCGGCGCGATCGCCTCCGCGGTGACGCTGGCCGTGTTCGCCTGGGTGGACCTGGTCTGGCT GAAGGGTGCAGCCCCGGCCGGCCGCCTGCTGGCGGCCAGCGTCGTCAGCGCCGCGGCCGGGTCGCTGGCGCGCCTCCTCC TTCATTGGGTGCTGCGCGTGCGCACCGAGCGAAACATGACCGACGCCACCGCCACGTACTACCTGCTGGTGGCCGTGCAG ATGCTGGCCTCGTACCTCGTGGTGCTCGCGGTGCATCTCCTCACCGACTGGACGGCCGTGTGGATCAAGCTGGTGGCCGA CATCCTGCTGGCGGTGGCGGGTTACCAGATTCACCCGCGCTGGCTGTTCAAGTCCGACCACACCCCCGAGGGAGTCTGA
Upstream 100 bases:
>100_bases GGGTCAGGCAGGAACGCCCGCAGTTCAGGCGGAATAGTAGTCCTTAGGTTTTTCGCGGCCTGACCGGGAAGCCGGAAGCG AACGGGAGCGTGAAACGGAC
Downstream 100 bases:
>100_bases CATGCCCTTCTACGGCAAGCTGTTCCTGTTCTGCCGCGCCGTGCTCCGGCGCCTGTCCCCGCGCTACACCCTTGTCCACC CGGAGCGGCTGCTGGAGCCT
Product: putative dolichyl-phosphate mannose synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSSAEATSPYSASSIIIIPALEPPPALVKYVQALLERGFPRIVIVDDGSSPACRSIFDSLARMSGCVVLRHEVNRGKGAA LKTALRHCLQQGWQQIYRRVIMVDADGQHAVEDVCGMARASHEHPDAYVLGIRDFNQKSVPARSRFGNRLTSGAFHLFYG RYLRDTQTGLRALPISLWEWATQIAGERFEYETNCLVQAMKQGIPMAEMPIRTLYFNKNENTHYRTLRDSWPIFKILIRH LGAYALAGAIASAVTLAVFAWVDLVWLKGAAPAGRLLAASVVSAAAGSLARLLLHWVLRVRTERNMTDATATYYLLVAVQ MLASYLVVLAVHLLTDWTAVWIKLVADILLAVAGYQIHPRWLFKSDHTPEGV
Sequences:
>Translated_372_residues MSSAEATSPYSASSIIIIPALEPPPALVKYVQALLERGFPRIVIVDDGSSPACRSIFDSLARMSGCVVLRHEVNRGKGAA LKTALRHCLQQGWQQIYRRVIMVDADGQHAVEDVCGMARASHEHPDAYVLGIRDFNQKSVPARSRFGNRLTSGAFHLFYG RYLRDTQTGLRALPISLWEWATQIAGERFEYETNCLVQAMKQGIPMAEMPIRTLYFNKNENTHYRTLRDSWPIFKILIRH LGAYALAGAIASAVTLAVFAWVDLVWLKGAAPAGRLLAASVVSAAAGSLARLLLHWVLRVRTERNMTDATATYYLLVAVQ MLASYLVVLAVHLLTDWTAVWIKLVADILLAVAGYQIHPRWLFKSDHTPEGV >Mature_371_residues SSAEATSPYSASSIIIIPALEPPPALVKYVQALLERGFPRIVIVDDGSSPACRSIFDSLARMSGCVVLRHEVNRGKGAAL KTALRHCLQQGWQQIYRRVIMVDADGQHAVEDVCGMARASHEHPDAYVLGIRDFNQKSVPARSRFGNRLTSGAFHLFYGR YLRDTQTGLRALPISLWEWATQIAGERFEYETNCLVQAMKQGIPMAEMPIRTLYFNKNENTHYRTLRDSWPIFKILIRHL GAYALAGAIASAVTLAVFAWVDLVWLKGAAPAGRLLAASVVSAAAGSLARLLLHWVLRVRTERNMTDATATYYLLVAVQM LASYLVVLAVHLLTDWTAVWIKLVADILLAVAGYQIHPRWLFKSDHTPEGV
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 41323; Mature: 41192
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAEATSPYSASSIIIIPALEPPPALVKYVQALLERGFPRIVIVDDGSSPACRSIFDSL CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH ARMSGCVVLRHEVNRGKGAALKTALRHCLQQGWQQIYRRVIMVDADGQHAVEDVCGMARA HHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHC SHEHPDAYVLGIRDFNQKSVPARSRFGNRLTSGAFHLFYGRYLRDTQTGLRALPISLWEW CCCCCCEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATQIAGERFEYETNCLVQAMKQGIPMAEMPIRTLYFNKNENTHYRTLRDSWPIFKILIRH HHHHCCCCCCHHHHHHHHHHHCCCCCHHCCCEEEEEECCCCCCCHHHHHCCHHHHHHHHH LGAYALAGAIASAVTLAVFAWVDLVWLKGAAPAGRLLAASVVSAAAGSLARLLLHWVLRV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RTERNMTDATATYYLLVAVQMLASYLVVLAVHLLTDWTAVWIKLVADILLAVAGYQIHPR HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCE WLFKSDHTPEGV EEECCCCCCCCC >Mature Secondary Structure SSAEATSPYSASSIIIIPALEPPPALVKYVQALLERGFPRIVIVDDGSSPACRSIFDSL CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH ARMSGCVVLRHEVNRGKGAALKTALRHCLQQGWQQIYRRVIMVDADGQHAVEDVCGMARA HHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHC SHEHPDAYVLGIRDFNQKSVPARSRFGNRLTSGAFHLFYGRYLRDTQTGLRALPISLWEW CCCCCCEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATQIAGERFEYETNCLVQAMKQGIPMAEMPIRTLYFNKNENTHYRTLRDSWPIFKILIRH HHHHCCCCCCHHHHHHHHHHHCCCCCHHCCCEEEEEECCCCCCCHHHHHCCHHHHHHHHH LGAYALAGAIASAVTLAVFAWVDLVWLKGAAPAGRLLAASVVSAAAGSLARLLLHWVLRV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RTERNMTDATATYYLLVAVQMLASYLVVLAVHLLTDWTAVWIKLVADILLAVAGYQIHPR HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCE WLFKSDHTPEGV EEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]