| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892432
Identifier: 51892432
GI number: 51892432
Start: 1432393
End: 1433520
Strand: Reverse
Name: 51892432
Synonym: STH1294
Alternate gene names: NA
Gene position: 1433520-1432393 (Counterclockwise)
Preceding gene: 51892433
Following gene: 51892431
Centisome position: 40.2
GC content: 56.47
Gene sequence:
>1128_bases ATGGGAGTGCGAGCGAGGCTCGTTTCAGGAATGTTGGCGCTGCTACTACTGATCGGCGGATGTGGTCAGGTAGATGCTGC TGGGCTTGTGGAGGAGTACCTGACAGCCCTCACCATCGGCGACTTTGACCGGGCTGCTCAACTCAGCACGGAGGCGTTGG TTGAACTGAACGGCGATGACAGTGCTGAAGCCCGGTTTGTCCAGACCTATTTGGCGCAGGTTCGTTTTACTGTGCGTGAG GCGCAAAAAGAGGACGACGACCGCTATCGTGTGCCGGTAGAACTAATCGCACCAGACCTAAGGCCGATTGTGGGCCGTGT CTTGGCGAATCTTCTCGGCGAGGCATTTGCCAGTGCGTTCATGCTTACACCTTTGGATGAGAAAACTATGACACAACGCC TGGTCGATTCCCTAACCGCAGAGATCACCAGATCAGATGCGTCAACCATTACCGTCGAGCGCACAGTCATGGTGGAAAGA ATCGACGGGCAGTGGAAGGTCACCACGCCGGTGTTCGCCGAAAGCGGCCTCTTGGACATTTTCGATGACGGTTTTCTGGC GAACAGTTATGCCGAGGAAAGCAGGGCCCGCCGGGCCGAGAGTTTGCGTAGGCGCATCGCAGCAATCGAGGAGCAGCTCA CAGAGCTGCGGCGGGACAGGGAGTTTGCCGAACAGTCTCGGTCTAAGTTGAGTAAGTTCGTCGTGTCCAACGCCAAGTTC TACTGGGCAGTTGACGGGTGGTGGGAGGAACCTGTCATCGAACTCACTGTCCAGAACAACACCGAGTTCCCAGTAGCGCG AGCCTATTTCCATGGCCGCCTCGTGTCCCCGGGTAGATCCGTCCCGTGGGTCGAGGAAGATTTCAACTACGCCATTCCCG GAGGTATTGAACCCGGTGAAATCCAGACGTGGAAGTTGGTTGCGAACTCTTTCAGCACTTGGGGTTCGGCTCCAAGAGAT CGGGACGACTTGATCCTGGAGGTCGAAGTCACAAGGCTTGACGGGCCAAACGATCAGGTCCTGTTAGATGCCGAGTTTCC CGATTACAAGGCAGAGTGGTTAGCAGACCTGGAAGCGGACTTGGCGGAGCTTCAGGAAGAACTGCGTGCCCTTAGAACCG AGGAGTGA
Upstream 100 bases:
>100_bases TCGACCCCAAGAGGGCTTGCCCTCCGCCGATGAGTTGCAATTGATGGTTTTGTCCGCTAGCATGAAATTGCGGGTCTAAT GCTTTGGCGAATGGAGGGAG
Downstream 100 bases:
>100_bases ATAATCATCCCCGGCTCAAAGGTTGGAGTCCAACCTCGTGGTGCTAAAGCAGCGACTGCATTAGCAGTGGCCATTTGGAA ACTCCTAGTGGTGTCACCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MGVRARLVSGMLALLLLIGGCGQVDAAGLVEEYLTALTIGDFDRAAQLSTEALVELNGDDSAEARFVQTYLAQVRFTVRE AQKEDDDRYRVPVELIAPDLRPIVGRVLANLLGEAFASAFMLTPLDEKTMTQRLVDSLTAEITRSDASTITVERTVMVER IDGQWKVTTPVFAESGLLDIFDDGFLANSYAEESRARRAESLRRRIAAIEEQLTELRRDREFAEQSRSKLSKFVVSNAKF YWAVDGWWEEPVIELTVQNNTEFPVARAYFHGRLVSPGRSVPWVEEDFNYAIPGGIEPGEIQTWKLVANSFSTWGSAPRD RDDLILEVEVTRLDGPNDQVLLDAEFPDYKAEWLADLEADLAELQEELRALRTEE
Sequences:
>Translated_375_residues MGVRARLVSGMLALLLLIGGCGQVDAAGLVEEYLTALTIGDFDRAAQLSTEALVELNGDDSAEARFVQTYLAQVRFTVRE AQKEDDDRYRVPVELIAPDLRPIVGRVLANLLGEAFASAFMLTPLDEKTMTQRLVDSLTAEITRSDASTITVERTVMVER IDGQWKVTTPVFAESGLLDIFDDGFLANSYAEESRARRAESLRRRIAAIEEQLTELRRDREFAEQSRSKLSKFVVSNAKF YWAVDGWWEEPVIELTVQNNTEFPVARAYFHGRLVSPGRSVPWVEEDFNYAIPGGIEPGEIQTWKLVANSFSTWGSAPRD RDDLILEVEVTRLDGPNDQVLLDAEFPDYKAEWLADLEADLAELQEELRALRTEE >Mature_374_residues GVRARLVSGMLALLLLIGGCGQVDAAGLVEEYLTALTIGDFDRAAQLSTEALVELNGDDSAEARFVQTYLAQVRFTVREA QKEDDDRYRVPVELIAPDLRPIVGRVLANLLGEAFASAFMLTPLDEKTMTQRLVDSLTAEITRSDASTITVERTVMVERI DGQWKVTTPVFAESGLLDIFDDGFLANSYAEESRARRAESLRRRIAAIEEQLTELRRDREFAEQSRSKLSKFVVSNAKFY WAVDGWWEEPVIELTVQNNTEFPVARAYFHGRLVSPGRSVPWVEEDFNYAIPGGIEPGEIQTWKLVANSFSTWGSAPRDR DDLILEVEVTRLDGPNDQVLLDAEFPDYKAEWLADLEADLAELQEELRALRTEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42171; Mature: 42040
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVRARLVSGMLALLLLIGGCGQVDAAGLVEEYLTALTIGDFDRAAQLSTEALVELNGDD CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHEEEECCCC SAEARFVQTYLAQVRFTVREAQKEDDDRYRVPVELIAPDLRPIVGRVLANLLGEAFASAF CHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHH MLTPLDEKTMTQRLVDSLTAEITRSDASTITVERTVMVERIDGQWKVTTPVFAESGLLDI HCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCEEECCCHHCCCCCHHH FDDGFLANSYAEESRARRAESLRRRIAAIEEQLTELRRDREFAEQSRSKLSKFVVSNAKF HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE YWAVDGWWEEPVIELTVQNNTEFPVARAYFHGRLVSPGRSVPWVEEDFNYAIPGGIEPGE EEEECCCCCCCEEEEEECCCCCCCHHHHHHCCEECCCCCCCCCCCCCCCEECCCCCCCCC IQTWKLVANSFSTWGSAPRDRDDLILEVEVTRLDGPNDQVLLDAEFPDYKAEWLADLEAD CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHH LAELQEELRALRTEE HHHHHHHHHHHCCCC >Mature Secondary Structure GVRARLVSGMLALLLLIGGCGQVDAAGLVEEYLTALTIGDFDRAAQLSTEALVELNGDD CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHEEEECCCC SAEARFVQTYLAQVRFTVREAQKEDDDRYRVPVELIAPDLRPIVGRVLANLLGEAFASAF CHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHH MLTPLDEKTMTQRLVDSLTAEITRSDASTITVERTVMVERIDGQWKVTTPVFAESGLLDI HCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCEEECCCHHCCCCCHHH FDDGFLANSYAEESRARRAESLRRRIAAIEEQLTELRRDREFAEQSRSKLSKFVVSNAKF HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE YWAVDGWWEEPVIELTVQNNTEFPVARAYFHGRLVSPGRSVPWVEEDFNYAIPGGIEPGE EEEECCCCCCCEEEEEECCCCCCCHHHHHHCCEECCCCCCCCCCCCCCCEECCCCCCCCC IQTWKLVANSFSTWGSAPRDRDDLILEVEVTRLDGPNDQVLLDAEFPDYKAEWLADLEAD CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHH LAELQEELRALRTEE HHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA