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The map label for this gene is agaD [H]

Identifier: 51892385

GI number: 51892385

Start: 1384906

End: 1385943

Strand: Reverse

Name: agaD [H]

Synonym: STH1247

Alternate gene names: 51892385

Gene position: 1385943-1384906 (Counterclockwise)

Preceding gene: 51892386

Following gene: 51892376

Centisome position: 38.86

GC content: 66.28

Gene sequence:

>1038_bases
ATGGCATATAGCATTCCCGACCAGTACCGCGACCGGACCCCGGCGCCGCCCCTGGACCGGGCGACGCTCAACCAGATGGC
GTGGCGCTCGGTCTTCCTGCAGGCTTCGTTCAACTATGAAAGAATGCAGGCCGCGGGCTGGCTGTACGCCATCCTCCCCG
GCCTGCAGAAGATCCACCGGAACAAGGACGACCTGGCGGCCGCGATGTCCCACAACCTGGAGTTCTTCAACACGCACCCG
TTCCTGGTCACCTTCGTGATGGGCATCGTGCTGTCGCTGGAGCAGAACAAGGCGGACATCGCCACGATCCGGGCGGTGCG
GGTCTCCGCGATGGGCCCGCTGGGCGGTATCGGCGACGCCCTGTTCTGGTTCACGCTGGTGCCGATCACCGCCGGCATCA
CCTCGAACATGGCCCTCACCGGCAACATCGCCGCCCCCTTCGTCTTCCTCCTGGTCTTCAACGTCGCGCAGTTCGCCATC
CGCTACTGGCTGATGCACTGGTCCTACCGGCTGGGCACCGACGCGATCGGGATCCTGACGGCCAATGCCCGCCAGTTCAC
CCGGGCGGCCTCCATCCTGGGCGTGTTCGTCGTCGGCGCCCTGACGTGCCTCTACGGCGGGACCGCGGTCAACGTCCAGA
TCCCCAACGGCACCACCTTCGAGGCCGTGCCGATCACCGCCGTCGTCAGCGCCGACCAGCTGGACCGGTACCGGGACCTG
CTCTACCAGACGGACCAGAACGGCAACCTGATCCGCGGCGCGGACGGTCAGCCGCAGCTGGCGGAGGGCGCGAGCATCCG
GCCGCTGGCGAGCGGCGACTTCCTGATCACGTACAACGAGTACGACGAGGTGCCGGTCACCATCGACGTCCAGGAGATCC
TGAACGGCATCCTGCCGAAACTGATCCCCCTGGGCCTGACGCTCCTGCTCTACTTCCTGTTCACCAAGCGCAACTGGACG
CCGCTCACGGCCATCGGCTTCCTGCTGGTCCTGGGCCTCATCGGCTCGGGGTTCGGCATCTGGCCGTCCATATGGTAA

Upstream 100 bases:

>100_bases
CTGCTGCTCCTGGCCCTGATCGGCTTCGCCCTGGCCTTCTGGGACTTCCAGCACCAGACCGCGCTGAAGGCCGCGGCCGT
GAGCGCAGGAGGCGACGACG

Downstream 100 bases:

>100_bases
GCGCCGGGCGATCCGCGCCCGGCGCTTTCCTTCCGTTATGCCCCTGGTTACGCCCCGATCCGCTCCACCCGGATCTCCCG
CTTCAGCCGCTCGACCTCGG

Product: PTS system N-acetylgalactosamine-specific IID component

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MAYSIPDQYRDRTPAPPLDRATLNQMAWRSVFLQASFNYERMQAAGWLYAILPGLQKIHRNKDDLAAAMSHNLEFFNTHP
FLVTFVMGIVLSLEQNKADIATIRAVRVSAMGPLGGIGDALFWFTLVPITAGITSNMALTGNIAAPFVFLLVFNVAQFAI
RYWLMHWSYRLGTDAIGILTANARQFTRAASILGVFVVGALTCLYGGTAVNVQIPNGTTFEAVPITAVVSADQLDRYRDL
LYQTDQNGNLIRGADGQPQLAEGASIRPLASGDFLITYNEYDEVPVTIDVQEILNGILPKLIPLGLTLLLYFLFTKRNWT
PLTAIGFLLVLGLIGSGFGIWPSIW

Sequences:

>Translated_345_residues
MAYSIPDQYRDRTPAPPLDRATLNQMAWRSVFLQASFNYERMQAAGWLYAILPGLQKIHRNKDDLAAAMSHNLEFFNTHP
FLVTFVMGIVLSLEQNKADIATIRAVRVSAMGPLGGIGDALFWFTLVPITAGITSNMALTGNIAAPFVFLLVFNVAQFAI
RYWLMHWSYRLGTDAIGILTANARQFTRAASILGVFVVGALTCLYGGTAVNVQIPNGTTFEAVPITAVVSADQLDRYRDL
LYQTDQNGNLIRGADGQPQLAEGASIRPLASGDFLITYNEYDEVPVTIDVQEILNGILPKLIPLGLTLLLYFLFTKRNWT
PLTAIGFLLVLGLIGSGFGIWPSIW
>Mature_344_residues
AYSIPDQYRDRTPAPPLDRATLNQMAWRSVFLQASFNYERMQAAGWLYAILPGLQKIHRNKDDLAAAMSHNLEFFNTHPF
LVTFVMGIVLSLEQNKADIATIRAVRVSAMGPLGGIGDALFWFTLVPITAGITSNMALTGNIAAPFVFLLVFNVAQFAIR
YWLMHWSYRLGTDAIGILTANARQFTRAASILGVFVVGALTCLYGGTAVNVQIPNGTTFEAVPITAVVSADQLDRYRDLL
YQTDQNGNLIRGADGQPQLAEGASIRPLASGDFLITYNEYDEVPVTIDVQEILNGILPKLIPLGLTLLLYFLFTKRNWTP
LTAIGFLLVLGLIGSGFGIWPSIW

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=189, Percent_Identity=44.973544973545, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788122, Length=207, Percent_Identity=33.8164251207729, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 37980; Mature: 37848

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSIPDQYRDRTPAPPLDRATLNQMAWRSVFLQASFNYERMQAAGWLYAILPGLQKIHR
CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
NKDDLAAAMSHNLEFFNTHPFLVTFVMGIVLSLEQNKADIATIRAVRVSAMGPLGGIGDA
CHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHH
LFWFTLVPITAGITSNMALTGNIAAPFVFLLVFNVAQFAIRYWLMHWSYRLGTDAIGILT
HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
ANARQFTRAASILGVFVVGALTCLYGGTAVNVQIPNGTTFEAVPITAVVSADQLDRYRDL
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECEEEEECHHHHHHHHHH
LYQTDQNGNLIRGADGQPQLAEGASIRPLASGDFLITYNEYDEVPVTIDVQEILNGILPK
HEEECCCCCEEECCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCEEEEHHHHHHHHHHH
LIPLGLTLLLYFLFTKRNWTPLTAIGFLLVLGLIGSGFGIWPSIW
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AYSIPDQYRDRTPAPPLDRATLNQMAWRSVFLQASFNYERMQAAGWLYAILPGLQKIHR
CCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
NKDDLAAAMSHNLEFFNTHPFLVTFVMGIVLSLEQNKADIATIRAVRVSAMGPLGGIGDA
CHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHH
LFWFTLVPITAGITSNMALTGNIAAPFVFLLVFNVAQFAIRYWLMHWSYRLGTDAIGILT
HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
ANARQFTRAASILGVFVVGALTCLYGGTAVNVQIPNGTTFEAVPITAVVSADQLDRYRDL
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECEEEEECHHHHHHHHHH
LYQTDQNGNLIRGADGQPQLAEGASIRPLASGDFLITYNEYDEVPVTIDVQEILNGILPK
HEEECCCCCEEECCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCEEEEHHHHHHHHHHH
LIPLGLTLLLYFLFTKRNWTPLTAIGFLLVLGLIGSGFGIWPSIW
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]