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The map label for this gene is lytR [H]

Identifier: 51892296

GI number: 51892296

Start: 1288818

End: 1289783

Strand: Reverse

Name: lytR [H]

Synonym: STH1158

Alternate gene names: 51892296

Gene position: 1289783-1288818 (Counterclockwise)

Preceding gene: 51892308

Following gene: 51892295

Centisome position: 36.17

GC content: 69.88

Gene sequence:

>966_bases
ATGCTATTCTCAGGGAGTCGTAGAACCATACCTCAACTAACGCGCTGGCGGAGAGGGGACCCGAATATGGCAACCAGACG
CCGCACGCTGTCCATCGTCCTGGCCGTCCTGCTGTTGCTCCTCGGGGGCTTCGCGGCCACGGCCTGGTTCGGCACGGGCC
CGGTGAACGTGCTGCTGATGGGGCTGGACGAGGGCAGGACCCGCACCGACGTGGTGGTCCTGGCGCACCTGGAGCCCCGC
AAGGGGATGCTCACCCTGCTGTCGCTGCCCAGGGACACCCTGGTGGAGATCGACTGCGCGCCCCTCAGCGAGTGGTGCGT
GACGCCGGACAAGCTGGCCCACGCCCACGCCTACGGCGGCGAGCGCGGGCCGGAGGTCACGGTCGAGACGGTGGAGCGGC
TCCTGGGGGTGGACATCGACCACTGGGTGCGGGTGGACTTCGAGGGCTTCCAGAAGGTCGTGGACCTCTTGGGCGGCGTG
GACCTCGTCATCGACCAGGACATGCATTACGAGGACCCGTACGCGGACCCGCCGCTCCACATCCACTTCGAGGCGTCGGA
AGAGCCGCAGCACCTGGACGGGCAGCGGGCGCTGGAGTTCGTCCGTTACCGCGGCGTCACCGGCGACATCGGCCGGACCG
AGCGCACCAAGCAGTTCCTGGTGGCGCTGGCCCGGAAGGCCCGGGAGACCCAGTCGCTGACCCGGCTGCCCTCGGCCATC
CGCACGGGCCTGGCGTACGTCGACACCGACATCGACGTCCGTACCGCCTTCTCCCTGGCCATCGCCGCGCTGCGGGTGGA
CCTGGACAGGACCCGGATGGAGACGCTGCCGGGCTGGGACGACCCCGGACACCGCCGGGGCTGGGTCTGGGTGCCGGACG
AGGAGGCGGTGGCCGAGGTGGTCGACCGGCTGATCCTCCACCCGGAGCCGCCGGCTGATGAGCCGGAGGTCGGAAGCGAA
GACTAA

Upstream 100 bases:

>100_bases
ACCACCTCAGTTGCACGTTCGCTTACCGTTGTCTTGTTCGGGGTCCGAACAGGCTTGTCCTGCCCGGGCCCGGATTTCCG
GTTGAAGCGAGCCAGGAGGC

Downstream 100 bases:

>100_bases
CTTGCTGTCTGGAAATCATGTCCCGCCTCCCCAAGCCTCGCGGGGATAGGTATAATAATTGCGGTGCGTATTGGCGCGGC
TAGTTTGCATTTCAGTTGAT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MLFSGSRRTIPQLTRWRRGDPNMATRRRTLSIVLAVLLLLLGGFAATAWFGTGPVNVLLMGLDEGRTRTDVVVLAHLEPR
KGMLTLLSLPRDTLVEIDCAPLSEWCVTPDKLAHAHAYGGERGPEVTVETVERLLGVDIDHWVRVDFEGFQKVVDLLGGV
DLVIDQDMHYEDPYADPPLHIHFEASEEPQHLDGQRALEFVRYRGVTGDIGRTERTKQFLVALARKARETQSLTRLPSAI
RTGLAYVDTDIDVRTAFSLAIAALRVDLDRTRMETLPGWDDPGHRRGWVWVPDEEAVAEVVDRLILHPEPPADEPEVGSE
D

Sequences:

>Translated_321_residues
MLFSGSRRTIPQLTRWRRGDPNMATRRRTLSIVLAVLLLLLGGFAATAWFGTGPVNVLLMGLDEGRTRTDVVVLAHLEPR
KGMLTLLSLPRDTLVEIDCAPLSEWCVTPDKLAHAHAYGGERGPEVTVETVERLLGVDIDHWVRVDFEGFQKVVDLLGGV
DLVIDQDMHYEDPYADPPLHIHFEASEEPQHLDGQRALEFVRYRGVTGDIGRTERTKQFLVALARKARETQSLTRLPSAI
RTGLAYVDTDIDVRTAFSLAIAALRVDLDRTRMETLPGWDDPGHRRGWVWVPDEEAVAEVVDRLILHPEPPADEPEVGSE
D
>Mature_321_residues
MLFSGSRRTIPQLTRWRRGDPNMATRRRTLSIVLAVLLLLLGGFAATAWFGTGPVNVLLMGLDEGRTRTDVVVLAHLEPR
KGMLTLLSLPRDTLVEIDCAPLSEWCVTPDKLAHAHAYGGERGPEVTVETVERLLGVDIDHWVRVDFEGFQKVVDLLGGV
DLVIDQDMHYEDPYADPPLHIHFEASEEPQHLDGQRALEFVRYRGVTGDIGRTERTKQFLVALARKARETQSLTRLPSAI
RTGLAYVDTDIDVRTAFSLAIAALRVDLDRTRMETLPGWDDPGHRRGWVWVPDEEAVAEVVDRLILHPEPPADEPEVGSE
D

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 35942; Mature: 35942

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSGSRRTIPQLTRWRRGDPNMATRRRTLSIVLAVLLLLLGGFAATAWFGTGPVNVLLM
CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
GLDEGRTRTDVVVLAHLEPRKGMLTLLSLPRDTLVEIDCAPLSEWCVTPDKLAHAHAYGG
CCCCCCCCEEEEEEEECCCCCCHHHEECCCCCCEEEEECCCCHHHCCCHHHHHHHHHCCC
ERGPEVTVETVERLLGVDIDHWVRVDFEGFQKVVDLLGGVDLVIDQDMHYEDPYADPPLH
CCCCCCHHHHHHHHHCCCHHHEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEE
IHFEASEEPQHLDGQRALEFVRYRGVTGDIGRTERTKQFLVALARKARETQSLTRLPSAI
EEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTGLAYVDTDIDVRTAFSLAIAALRVDLDRTRMETLPGWDDPGHRRGWVWVPDEEAVAEV
HHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHH
VDRLILHPEPPADEPEVGSED
HHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLFSGSRRTIPQLTRWRRGDPNMATRRRTLSIVLAVLLLLLGGFAATAWFGTGPVNVLLM
CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
GLDEGRTRTDVVVLAHLEPRKGMLTLLSLPRDTLVEIDCAPLSEWCVTPDKLAHAHAYGG
CCCCCCCCEEEEEEEECCCCCCHHHEECCCCCCEEEEECCCCHHHCCCHHHHHHHHHCCC
ERGPEVTVETVERLLGVDIDHWVRVDFEGFQKVVDLLGGVDLVIDQDMHYEDPYADPPLH
CCCCCCHHHHHHHHHCCCHHHEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEE
IHFEASEEPQHLDGQRALEFVRYRGVTGDIGRTERTKQFLVALARKARETQSLTRLPSAI
EEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTGLAYVDTDIDVRTAFSLAIAALRVDLDRTRMETLPGWDDPGHRRGWVWVPDEEAVAEV
HHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHH
VDRLILHPEPPADEPEVGSED
HHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]