| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892295
Identifier: 51892295
GI number: 51892295
Start: 1287614
End: 1288684
Strand: Reverse
Name: 51892295
Synonym: STH1157
Alternate gene names: NA
Gene position: 1288684-1287614 (Counterclockwise)
Preceding gene: 51892296
Following gene: 51892294
Centisome position: 36.14
GC content: 67.41
Gene sequence:
>1071_bases ATGAACCTACGTCAGCGGGCGGCCGTAGCGCTCCTCTCCCTGTGCGCCCTGGTCCTCAGCGCCTGTGGCGGCTCCCAGCA GCCTCCCAGCAACCAGCCCCCGTCGGGCGGCGGGCAGCAGCAACAGCAGCAGGAGCCGCAGGGGTCGGCGGAGCCCAAGG AGATCGTGGTCTACACCTCGCACCAGGCCGACATCCACGAACCGCTGTTCAAGGCTTTCGAAGAGGCCACCGGCATCAAG GTGACCCCGGTCTACGCGGCCACGGGCGAGCTCTTCCAGCGGATGCGGGCGGAGGCCAACAACCCGCTGGGCGACGTGAT CTTCGGCGGCGGCGCGGAGACCCACGAGGCCAACAAGGACCTCCTGCAGCCCTACGTGCCCAAGGAGATCGACAAGCTGG CGCCGGGCACCGTGGCCAAGGACAACAGCTGGACGGGCTTCACCGCCCTGCCCATCGTGATCATGTACAACACCAACCTG CTGACGGCCGACGAGGCGCCCAAGAGCTTCGCCGACCTGACCGACCCCAAGTGGGCGGGCAAGATCGCCATGCCTGACGC GGCCAAGTCCGGCTCCGCCTACACCACCGTGGTGACGATCCTGCACGCGATGGGCCGGGACGACGGCAAGGGCTGGGAGG TCATGAAGCAGATCGCGGCCAACGCCAAGATCCTGGCCTCGTCCTCCCAGGGCCCGAAGGGCACGAATGACGGCGAGTAC GCCGTGTCCCTGACCCACGAGGAGGCGGCGTTCAAGTACGTCGCGGCGGGCGGCCCCGTGGGGATCGTCTACCCCGCAGA GGGCACCTCCAACGTGCCTGATGCCGTCGCGATCATCAAGGCTGCGAAGCACCCGGAGAACGCCAAGGCGTTCATCGACT TCATGGTCTCGCAGCAGATGCAGGAGTACGTGGCCAAGGAGCTGAACCGGCGTCCGGTGCGCACGGACGTCGCCCCGCCG GAGGGCCTGGAGGACGTGTCGAAGATCAAGTTCCTGGACTACGACATGGACTGGGCGGCGAACCAGCGCGAGGCCGTCCT CGACCAGTGGAAGGACATCGTGGTCCAGTAG
Upstream 100 bases:
>100_bases AGCCTCGCGGGGATAGGTATAATAATTGCGGTGCGTATTGGCGCGGCTAGTTTGCATTTCAGTTGATCCTGAATCCGTGC GCAAGACAGGAGGTAGTCCC
Downstream 100 bases:
>100_bases CCGGCGGCCCTGATGGGGTGCTCCCTTGACGGGAGCACCCCACTGTCCTCATTGGGATGCGAACTTGTCAACGTGGAGGT CGGATGAATGTCGAAGGTCA
Product: iron ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTSHQADIHEPLFKAFEEATGIK VTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKDLLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNL LTADEAPKSFADLTDPKWAGKIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQMQEYVAKELNRRPVRTDVAPP EGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ
Sequences:
>Translated_356_residues MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTSHQADIHEPLFKAFEEATGIK VTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKDLLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNL LTADEAPKSFADLTDPKWAGKIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQMQEYVAKELNRRPVRTDVAPP EGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ >Mature_356_residues MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTSHQADIHEPLFKAFEEATGIK VTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKDLLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNL LTADEAPKSFADLTDPKWAGKIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQMQEYVAKELNRRPVRTDVAPP EGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 38293; Mature: 38293
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEC HQADIHEPLFKAFEEATGIKVTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKD CCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHH LLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNLLTADEAPKSFADLTDPKWAG HHCCCCCHHHHHCCCCCCCCCCCCCCHHHEEEEEEECCCEEECCCCCHHHHHCCCCCCCC KIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY CEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCE AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQM EEEEECHHHHEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH QEYVAKELNRRPVRTDVAPPEGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ HHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEC HQADIHEPLFKAFEEATGIKVTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKD CCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHH LLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNLLTADEAPKSFADLTDPKWAG HHCCCCCHHHHHCCCCCCCCCCCCCCHHHEEEEEEECCCEEECCCCCHHHHHCCCCCCCC KIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY CEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCE AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQM EEEEECHHHHEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH QEYVAKELNRRPVRTDVAPPEGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ HHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]