Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is yqjP [H]

Identifier: 51892123

GI number: 51892123

Start: 1103086

End: 1104081

Strand: Reverse

Name: yqjP [H]

Synonym: STH985

Alternate gene names: 51892123

Gene position: 1104081-1103086 (Counterclockwise)

Preceding gene: 51892127

Following gene: 51892120

Centisome position: 30.96

GC content: 72.09

Gene sequence:

>996_bases
GTGCGTGCGGAGCCCCCGCCCTACCAGCCGCCCGCCGAGGTGAGCCCCGGCATCTTCCTGGTGCCCATCCCCATCCCGAT
TCCCCTGCGGTACGTCAACTGCTACCTGTTGCGAGGACCCTCGGGTTGGACCCTGGTCGACACCGGCTTCCACGACAGCC
TGGCCGAGGCCGCCTGGCCCCGCGCCCTTGCGCACCTGGCCATTCGCGCGCAGGACATCAAGCAGATCGTGCTGACTCAC
TACCACCCGGATCACGTGGGCGCGGCCGGCTGGCTGCAGCAGCTCACCGGCGCCCCGGCCTTCCTGCCGGAGACCGAGAT
GGAGCAGTTCCACCGGTTCTGGGCGGACGGGACCGGGGCCATGGCGGAGCGGCTCCAGGCGCTCTTCCTCGGGGAAGGGA
TGGACGAGGCCACTGCGAGCGCCCTCCGCCGGCACCACCTCCAGCAGGTGGAGCGGGTCCGACCGCTCCCGGAGCTACGG
CCGCTGGCAATCGACAGCCGGATCGCCATGGGCGACGGCACCTATGAGGTGATCTGGACGCCGGGCCACTCCGACGGGCT
GGCGGTCTTCTGGGACGCGCGGCGTTCGATCCTGCTGGCCAACGATATGCTGCTCAGCGGCATCACACCCAACGTGTCGG
TGTGGCCCGGCAGCCGCCCGAACCCGCTGGCCGACTACCTGGCGTCGCTCCGGCGGGTGGCCGCCCTGGGCGCCCGACTT
GCGCTGCCGGGCCACCGGGCCCTGATCCGCGACGTGGCCGGGCGTGCCCGGGAGATCCTGGCCCACCACGCCGAAAGGCT
GGCCAGGGTGACGGACGCGGCCGCAGCCTCCCCGGGCGGCGCCACGGCGTGGGAGATCTGTCGGCGGATCTTCCCGGTGG
ACGGCCTGACGCTGCACCAGGTCCGCTTCGCCATGGCGGAGACGCTGGCGCACCTGGTCTATCTCTGCCGCGAGGGGCGG
CTGCGAAAGGAGGGCATGCGCTACCTGCGGGCATGA

Upstream 100 bases:

>100_bases
GGCGCGGTGTATCGTCGAAAAGGACACAACCTTGACGTGACTCTATTCTCCCTGGGTCCACCGTCGCCTGCCGGATCCGC
GAGAGGAGGAGGCCGAGACC

Downstream 100 bases:

>100_bases
GCTTCGGGCGCCGCCGGCCGGCGTCCACCCGGAGAAGCCCGATGCGGTGTAATCGAGTAGGAGGGGGCGGCTAGCCCCCG
TCCTCTCACACCACCGGACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWPRALAHLAIRAQDIKQIVLTH
YHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGAMAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELR
PLAIDSRIAMGDGTYEVIWTPGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL
ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQVRFAMAETLAHLVYLCREGR
LRKEGMRYLRA

Sequences:

>Translated_331_residues
MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWPRALAHLAIRAQDIKQIVLTH
YHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGAMAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELR
PLAIDSRIAMGDGTYEVIWTPGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL
ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQVRFAMAETLAHLVYLCREGR
LRKEGMRYLRA
>Mature_331_residues
MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWPRALAHLAIRAQDIKQIVLTH
YHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGAMAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELR
PLAIDSRIAMGDGTYEVIWTPGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL
ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQVRFAMAETLAHLVYLCREGR
LRKEGMRYLRA

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787158, Length=135, Percent_Identity=34.8148148148148, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 36603; Mature: 36603

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWP
CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCHHHHHHHHHH
RALAHLAIRAQDIKQIVLTHYHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHH
MAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELRPLAIDSRIAMGDGTYEVIWT
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCEEEEEC
PGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL
CCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHH
VRFAMAETLAHLVYLCREGRLRKEGMRYLRA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWP
CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCHHHHHHHHHH
RALAHLAIRAQDIKQIVLTHYHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHH
MAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELRPLAIDSRIAMGDGTYEVIWT
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCEEEEEC
PGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL
CCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHH
VRFAMAETLAHLVYLCREGRLRKEGMRYLRA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]