Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is 51891996

Identifier: 51891996

GI number: 51891996

Start: 969496

End: 970098

Strand: Reverse

Name: 51891996

Synonym: STH858

Alternate gene names: NA

Gene position: 970098-969496 (Counterclockwise)

Preceding gene: 51891997

Following gene: 51891982

Centisome position: 27.2

GC content: 66.5

Gene sequence:

>603_bases
GTGATGGAACCTGTTGACGCCGCCGGGGATGCGGGGCGGGCTGCTCTGCCACCGGTGCAGACCGACCCCGTGACGTCGGC
CGAAGAAGCGCTCGCGCGGATTCCGCCCGCAGCCCTGGAAGGGCGGACATTCGACGCGCTTCTGGTTGAAGACTACGGGC
ACCGTAGCCCCGACCGCCAGTGGCATGAGCGGGAGTGCAGCACGTGGATCGTCCAGATCCTCCACCCCAGCTCGGGCGTC
ACCTTCCTCATCGATGCCGCAACCGGCGAACTGAACGCCTTCGTCCAGAGCGAAGCGCAAGCTCCGGCGAAGTTGCCGAA
GTCGGCTCAGGATGCGGTGGACCTGGTTTTCGAGCAGTGGGGGCACCTTCCGTACATCCGTCAGTTCCCGAGCGCTATCG
GATCTTCGGAGAGTCCGCTTCGCCTGCCCGATGAGTCCGAGATAGACCGCTTCTCTGCGCTGTCCACGACCGCCGCCACC
GCCGACCGGCGCGGCGAATATCTCGTCACGCCACCCCGAACTGGGAGGAAGACGGCCGCGAAAGACAGGCCAGGTGGGAG
TTCACCGTGTATCCCACCGGTTTCGTCGCGCCGCCCGCCGTAG

Upstream 100 bases:

>100_bases
CGGGTTCGCTGCGGTCTGTGACGCACTGCTGCTCATCGCGGGCTGCACCGTTCCTGAACCTGCGTCGCCACGTTCCCATC
AGGGAACGAGTCCCCCGCCA

Downstream 100 bases:

>100_bases
ACGGGGACCCACTCCCGGACTCCCTGACGTGAACCCACAGACAGAGCCCAGAGCACCCAGAGAGCCGAGGGACGACCCTC
GGCTCCACACGTTTCGCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MMEPVDAAGDAGRAALPPVQTDPVTSAEEALARIPPAALEGRTFDALLVEDYGHRSPDRQWHERECSTWIVQILHPSSGV
TFLIDAATGELNAFVQSEAQAPAKLPKSAQDAVDLVFEQWGHLPYIRQFPSAIGSSESPLRLPDESEIDRFSALSTTAAT
ADRRGEYLVTPPRTGRKTAAKDRPGGSSPCIPPVSSRRPP

Sequences:

>Translated_200_residues
MMEPVDAAGDAGRAALPPVQTDPVTSAEEALARIPPAALEGRTFDALLVEDYGHRSPDRQWHERECSTWIVQILHPSSGV
TFLIDAATGELNAFVQSEAQAPAKLPKSAQDAVDLVFEQWGHLPYIRQFPSAIGSSESPLRLPDESEIDRFSALSTTAAT
ADRRGEYLVTPPRTGRKTAAKDRPGGSSPCIPPVSSRRPP
>Mature_200_residues
MMEPVDAAGDAGRAALPPVQTDPVTSAEEALARIPPAALEGRTFDALLVEDYGHRSPDRQWHERECSTWIVQILHPSSGV
TFLIDAATGELNAFVQSEAQAPAKLPKSAQDAVDLVFEQWGHLPYIRQFPSAIGSSESPLRLPDESEIDRFSALSTTAAT
ADRRGEYLVTPPRTGRKTAAKDRPGGSSPCIPPVSSRRPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21564; Mature: 21564

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEPVDAAGDAGRAALPPVQTDPVTSAEEALARIPPAALEGRTFDALLVEDYGHRSPDRQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCEEEEEHHCCCCCCCHH
WHERECSTWIVQILHPSSGVTFLIDAATGELNAFVQSEAQAPAKLPKSAQDAVDLVFEQW
HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHH
GHLPYIRQFPSAIGSSESPLRLPDESEIDRFSALSTTAATADRRGEYLVTPPRTGRKTAA
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
KDRPGGSSPCIPPVSSRRPP
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMEPVDAAGDAGRAALPPVQTDPVTSAEEALARIPPAALEGRTFDALLVEDYGHRSPDRQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCEEEEEHHCCCCCCCHH
WHERECSTWIVQILHPSSGVTFLIDAATGELNAFVQSEAQAPAKLPKSAQDAVDLVFEQW
HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHH
GHLPYIRQFPSAIGSSESPLRLPDESEIDRFSALSTTAATADRRGEYLVTPPRTGRKTAA
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
KDRPGGSSPCIPPVSSRRPP
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA