Click here to switch to the map view.

The map label for this gene is oppB-1 [H]

Identifier: 51598589

GI number: 51598589

Start: 339078

End: 339998

Strand: Direct

Name: oppB-1 [H]

Synonym: BG0332

Alternate gene names: 51598589

Gene position: 339078-339998 (Clockwise)

Preceding gene: 51598588

Following gene: 51598590

Centisome position: 37.5

GC content: 30.51

Gene sequence:

>921_bases
ATGTTAAGGTTTACTTTAAAAAAAATAATAGGAATGATACCAACTTTACTAGCAATCGTTTTTTTATGCTTTTTTGTAAT
GAGGATGGCTCCTGGAAGTCCATTTGATTCTGAAAAACCTATTGATCCTCAAGTAAAAGCAAGATTAATGGAAAAATATC
ATCTTGACAAACCTTTTTATATTCAAGCTTTTTATTATATTTTAAACGTTCTAAAAGGAGATCTGGGACCTTCTTTAAAA
AAGAAAGACCTTACAGTTAATCAATATATAAAATTAGGATTTCCAAAATCACTTACACTAGGAGTAATATCCCTTATAAT
ATCACTATCAATAGGAATACCAATAGGAATATTAGCTGCTATTTATAAAAACACTTATATAGATTATATAATAGTATCAA
TAGCAATATTCGGAATTTCCATACCATTATTCGTAATAGGACCAATTTTACAATACTTTTTTGCAATTAAATGGGGTTTG
CTTTACACCTCCGGATGGATCACAGAAAGAGGGGGATTTTCAAATTTAATTCTACCCATAATAACTCTTACCATGCCCAA
TATAGCTATTTTCTCAAGAATAATCAGAGGCTCAATGCTAGAAATAATACAGAGCGACTTTGTAAGAACTGCACGTGCAA
AAGGACTAAGCTTCAGAAAGATCGTTATAAAGCACATGTTAAGAGGAGCAATGCTGCCTGTAGTAAGTTATATAGGTCCA
GCATTTGCTGCCATAATCTCTGGAAGCGTAGTTATTGAAAAAATATTTAGAATTGCTGGGATGGGAATGTTTATAACAGA
ATCCGCACTAAACAGAGATTATCCAGTATTAATGGGAGGATTGTTAGTATATTCAATAATACTTCTTATTTCTATATTAA
TATCAGATATTATATATAAAATGTTAGATCCAAGAGTATAA

Upstream 100 bases:

>100_bases
CCTATCAAAAATTATAATTTATAACTTGAAAAACAATAAACACTATATGATATAATGGACTAATACGTAATGTTGCCAAT
CTATTTACAAAGGAGCAAAA

Downstream 100 bases:

>100_bases
AAGGAAATCAAAATGAATAGCATTGAAAAACAAAATGAAGAAAACAGTTCTAAATCCGAAAGAAGAGCTTGGTCAAGATT
CAAAGAAAATAAACTGGCAT

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLRFTLKKIIGMIPTLLAIVFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFYIQAFYYILNVLKGDLGPSLK
KKDLTVNQYIKLGFPKSLTLGVISLIISLSIGIPIGILAAIYKNTYIDYIIVSIAIFGISIPLFVIGPILQYFFAIKWGL
LYTSGWITERGGFSNLILPIITLTMPNIAIFSRIIRGSMLEIIQSDFVRTARAKGLSFRKIVIKHMLRGAMLPVVSYIGP
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYKMLDPRV

Sequences:

>Translated_306_residues
MLRFTLKKIIGMIPTLLAIVFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFYIQAFYYILNVLKGDLGPSLK
KKDLTVNQYIKLGFPKSLTLGVISLIISLSIGIPIGILAAIYKNTYIDYIIVSIAIFGISIPLFVIGPILQYFFAIKWGL
LYTSGWITERGGFSNLILPIITLTMPNIAIFSRIIRGSMLEIIQSDFVRTARAKGLSFRKIVIKHMLRGAMLPVVSYIGP
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYKMLDPRV
>Mature_306_residues
MLRFTLKKIIGMIPTLLAIVFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFYIQAFYYILNVLKGDLGPSLK
KKDLTVNQYIKLGFPKSLTLGVISLIISLSIGIPIGILAAIYKNTYIDYIIVSIAIFGISIPLFVIGPILQYFFAIKWGL
LYTSGWITERGGFSNLILPIITLTMPNIAIFSRIIRGSMLEIIQSDFVRTARAKGLSFRKIVIKHMLRGAMLPVVSYIGP
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYKMLDPRV

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=41.1764705882353, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=35.0148367952522, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=34.0909090909091, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=29.903536977492, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=28.4530386740331, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=29.5731707317073, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787550, Length=246, Percent_Identity=26.4227642276423, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34227; Mature: 34227

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50928 ABC_TM1 ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCC
>Mature Secondary Structure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HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]