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The map label for this gene is yfjD [H]

Identifier: 51598463

GI number: 51598463

Start: 202426

End: 203664

Strand: Direct

Name: yfjD [H]

Synonym: BG0202

Alternate gene names: 51598463

Gene position: 202426-203664 (Clockwise)

Preceding gene: 51598459

Following gene: 51598464

Centisome position: 22.39

GC content: 27.2

Gene sequence:

>1239_bases
ATGTTAGAATTAATCGTGATATTACTATTTATAATATTGTCTGCTATTTTTTCAGCATCTGAAACAGCTTACACTTCTTT
AAGCATGATTCAGATACAAGATATAAGAAAAAAAGGAAAATCAGGAATATCGGTTTACAACTTGGTTCAATCCCCTTCAA
AATTAATCACTACTATTCTTATCGGTAACAATATATCAAATATTATTGCAAGTACACTTACAACAAAATTTGTACTTGAA
AAATACGGAAACAGCGCACTTGCAATATCAACAGGCCTAATAACAATAATCGTTCTAATTTTTGCAGAAATACTTCCAAA
ACAAATTGCAATCCTAAACAATGAAATCATTGCTCTATCTACTTCATTTTTTTTAAAACCATTAATTTTTATATTCACTC
CGCTAATATATATAATAAATAAAATAATAAAAAAAATATTAAATCTCCTTAAAATTAAGACAAGCTATAAAATGACTAAA
GAGAGCATAAAAAATATACTCTCTTTAGCAGGAAATTTGGGAATTTTAAAAAACGACTCTAGAATATTTATGCAAAAAAT
GCTAGACATAGATCAAGTAAGAGCTTCTGAGATCATGACTCACAGAACAGAGGTTTTTTCACTCTCAAGCTCATCAAAGC
TAAAAGATGTAATTAAATTGATCAAAGAGGAAGGATACTATAGAATTCCTATATACAAAGGTCAAAGCAGAGAACAGATA
ATTGGAATTTTAATAGCTAAAGACCTTATAGAAGTCAATAAAAAAGACATGAATAAAAATGTTTCTCAATTTATTAAACC
GGCTGTATTTGTGCAACAAAACAAAAGAATAAAAGACATATTAGATATTATGAGAAAAAAGCAAAAAATAATGGCAATCG
TAATTGACGAGTATGGTGGTTTTTCAGGAATACTTACAATAGAAGACATAGTAGAAAAAATTTTTGGAGCAATATCTGAC
GAATACGACATTAAAGAGGAAAAACCTCTTATTACACAAATCAATAACAATACTTACTCAATACTTGGAGAAACTACTTT
TGACGAGATCGAAGAGATAATTGGAATATCTATTGAACATAAAGAATATACAAATACAATTGGAGGATACTTAATAGATC
TGCTTGATAAAATACCAACAAAAGACGAAACTGTAAAAACAGCTGATGGAGAATATTTTATTAATAAAATTCAGAATAAT
AAAATTGAAATAATAACCTTTATTAAATCTAAAAATTAG

Upstream 100 bases:

>100_bases
TTCCGGTCAGCGCCTTCTAAAGTCAAGTCAAAAATATTTTTATTGCTTAAGAGTATAATTTAAAGCATTTTTATTAAAGA
TAAATTAAAATAATACATAT

Downstream 100 bases:

>100_bases
CGATAAAATTCGCTTACAAAATTAAAATAATTAAAAATATTGGGAGAAACAAATGTTTGACATAAAACAAATTTTTAATA
AAACTTATGAATATTTAGTA

Product: hemolysin, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MLELIVILLFIILSAIFSASETAYTSLSMIQIQDIRKKGKSGISVYNLVQSPSKLITTILIGNNISNIIASTLTTKFVLE
KYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALSTSFFLKPLIFIFTPLIYIINKIIKKILNLLKIKTSYKMTK
ESIKNILSLAGNLGILKNDSRIFMQKMLDIDQVRASEIMTHRTEVFSLSSSSKLKDVIKLIKEEGYYRIPIYKGQSREQI
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGGFSGILTIEDIVEKIFGAISD
EYDIKEEKPLITQINNNTYSILGETTFDEIEEIIGISIEHKEYTNTIGGYLIDLLDKIPTKDETVKTADGEYFINKIQNN
KIEIITFIKSKN

Sequences:

>Translated_412_residues
MLELIVILLFIILSAIFSASETAYTSLSMIQIQDIRKKGKSGISVYNLVQSPSKLITTILIGNNISNIIASTLTTKFVLE
KYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALSTSFFLKPLIFIFTPLIYIINKIIKKILNLLKIKTSYKMTK
ESIKNILSLAGNLGILKNDSRIFMQKMLDIDQVRASEIMTHRTEVFSLSSSSKLKDVIKLIKEEGYYRIPIYKGQSREQI
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGGFSGILTIEDIVEKIFGAISD
EYDIKEEKPLITQINNNTYSILGETTFDEIEEIIGISIEHKEYTNTIGGYLIDLLDKIPTKDETVKTADGEYFINKIQNN
KIEIITFIKSKN
>Mature_412_residues
MLELIVILLFIILSAIFSASETAYTSLSMIQIQDIRKKGKSGISVYNLVQSPSKLITTILIGNNISNIIASTLTTKFVLE
KYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALSTSFFLKPLIFIFTPLIYIINKIIKKILNLLKIKTSYKMTK
ESIKNILSLAGNLGILKNDSRIFMQKMLDIDQVRASEIMTHRTEVFSLSSSSKLKDVIKLIKEEGYYRIPIYKGQSREQI
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGGFSGILTIEDIVEKIFGAISD
EYDIKEEKPLITQINNNTYSILGETTFDEIEEIIGISIEHKEYTNTIGGYLIDLLDKIPTKDETVKTADGEYFINKIQNN
KIEIITFIKSKN

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=334, Percent_Identity=28.4431137724551, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI40068055, Length=342, Percent_Identity=25.7309941520468, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI40068053, Length=342, Percent_Identity=25.7309941520468, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI94681046, Length=307, Percent_Identity=25.4071661237785, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI40068051, Length=297, Percent_Identity=24.5791245791246, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI145693175, Length=403, Percent_Identity=29.0322580645161, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1790664, Length=430, Percent_Identity=22.3255813953488, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786879, Length=225, Percent_Identity=29.7777777777778, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082033, Length=228, Percent_Identity=21.9298245614035, Blast_Score=88, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71980512, Length=358, Percent_Identity=27.0949720670391, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17539402, Length=343, Percent_Identity=27.9883381924198, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17554630, Length=353, Percent_Identity=24.6458923512748, Blast_Score=71, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6324512, Length=282, Percent_Identity=27.6595744680851, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46606; Mature: 46606

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELIVILLFIILSAIFSASETAYTSLSMIQIQDIRKKGKSGISVYNLVQSPSKLITTIL
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHH
IGNNISNIIASTLTTKFVLEKYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALS
CCCCHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TSFFLKPLIFIFTPLIYIINKIIKKILNLLKIKTSYKMTKESIKNILSLAGNLGILKNDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCH
RIFMQKMLDIDQVRASEIMTHRTEVFSLSSSSKLKDVIKLIKEEGYYRIPIYKGQSREQI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHH
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGG
HHHHHHHHHHHHCHHHCCCCHHHHHCHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCC
FSGILTIEDIVEKIFGAISDEYDIKEEKPLITQINNNTYSILGETTFDEIEEIIGISIEH
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCCCC
KEYTNTIGGYLIDLLDKIPTKDETVKTADGEYFINKIQNNKIEIITFIKSKN
HHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHCCCCEEEEEEEECCC
>Mature Secondary Structure
MLELIVILLFIILSAIFSASETAYTSLSMIQIQDIRKKGKSGISVYNLVQSPSKLITTIL
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHH
IGNNISNIIASTLTTKFVLEKYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALS
CCCCHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TSFFLKPLIFIFTPLIYIINKIIKKILNLLKIKTSYKMTKESIKNILSLAGNLGILKNDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCH
RIFMQKMLDIDQVRASEIMTHRTEVFSLSSSSKLKDVIKLIKEEGYYRIPIYKGQSREQI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHH
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGG
HHHHHHHHHHHHCHHHCCCCHHHHHCHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCC
FSGILTIEDIVEKIFGAISDEYDIKEEKPLITQINNNTYSILGETTFDEIEEIIGISIEH
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCCCC
KEYTNTIGGYLIDLLDKIPTKDETVKTADGEYFINKIQNNKIEIITFIKSKN
HHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]