| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is 51597842
Identifier: 51597842
GI number: 51597842
Start: 4218022
End: 4220514
Strand: Direct
Name: 51597842
Synonym: YPTB3551
Alternate gene names: NA
Gene position: 4218022-4220514 (Clockwise)
Preceding gene: 51597841
Following gene: 51597843
Centisome position: 88.9
GC content: 38.99
Gene sequence:
>2493_bases ATGCAAGATAATATCGACCATACTGCATCCGTTATAGCGGATACTGATAATACGATTCATCAGCAAGCCAAAGCAGAAGA GCGCCACCGCCAGGCCGTCAGGCGGGCAACACAGCTACGCAACGATCCGGTACTCAGTGGCATCAATAAACTGGCCTTTT CTGTTGCACCAAAAATATTGCAGCCTGAAGCCAGAACAGATCTTTCACTGGCCGAAGGAATACCAGAACGAGCAAATGAG TATGCCGATCCGGCATCTATCCAATCCTTGTTCTCTCCGGGCCGCTATTTATGCGAATTGTATCATGTAGCAAAAGAGTT ACATGAAGATGGAAACAAACTGCATATCGATAAACGCCGCCCTGATTTACAAGAGCTGGTGCTTAGTAACAGTAATATGA ATCAAGAAGTCTCTTCGCTGGAGATCTTACTCAATGTACTGCAAACGAAGACGCCTCTGGATGAGCTGACTAAAGATACC GAAGCACACGCAAATGACAGTTCTTTCACCCTGCCTTATGACGATAACCTGACAGTCATTAATGCAATACTGGAAGATAA AGCTATCAGTCTGCGAGAAATTGCAGTGCTACTGACGGAGGAGAGTGATTTTAGCCCTACACCCGCATTAGTACAGGAAC AACTGGGATTGAATCCGGCCAGTTATGCATTAATTGATATAAAATCCCCATTGGATGAGAGTTACGCCAAACGCCTGGCA CATGCCACGCAACTCAGTGTTGAACAACTGCAATGGCTTAATAAAAATGCCATTGAAAATAGCAGCAATAAAAATGATCC AGCCAAACTCGAAATACTCGCAGTCATCTCCGAATATCGCCGTTTACATCAGCGTTACGGCCTGTCTGTCGATCCGTTTA TCGCCATTATTAATGCCGTTAACACCACCCATACCAACGAAAATAAAACCAGTTTCTTCCAGCAGATTTTCTCTACCCTT GATGTAGATGCAGGATTTAACTTCCTTGATCAGGGTTCGTGGGAAGTGATTATCCGCAAGGCATTGGGCATTACTGCCGA AGAACTGTTACGTATTGCGAAATATTGCTTTGGTAAGAGTTCAATTAGCAACGTAAAGATGAATAGTAAAAAATTCAGCC AATTATACCGTATGGCAATGATCCCCCGCACACTTGGTGTGAGTTTCTCGCAAGCTGAATATCTATGGCAGTTATATAGC CATTCAGATGAAAATATTATGGAAAAAATAGCCCAGGGTAATGCTCTGACCATTATTGATGCCATTATTGTGCTAGAAAA TACCCTTCAATGGATGAGTGAGCAAAAACTGGATATCACCACCCTACAAGCCATGCTCACCAAGCAATACAGCACCACAG CGACCCCTGAATTATTTAATTTCTTATCCAATATTTATCAAACCTTAGGTAAGCAAGTTTATTCCGAATCGCTCAAACCT AATCTGTATCGCAGCTTGGCAAACGGCTTCCACCTAAAAGCTAATGTAGTCGCAGGGCTGGTCAATTGGTTAGCAAAAAA TGACTCTGAATTTACCTTAGAAAGATTTTGGCAAAATATTTCCATGACCTTTGCTGAAGAGCCTTCATTGCACCAACTGG AAGTCCATCAACCCTTGCTTATTCAATGCCAAAAACTGAGCCAATACGTATTAATTGCGCAATGGGCAGAGTTGTCTGAA CAAGAGATAGCATTAATCTTATTACCCAATGGCATTGATAATAGAGGCAGTGCCCCTTCTCCAAGTATCACGCTGTTAAA GTTATTATCTGAATTTAAGTTATGCCAACAAGAGGCTAAGGTGTCACAAAGCGAATTATTTGACATTATGCAACAGCTGA TTACTAATACAAATGAAAAACAAGAAAAATTAAGAAATTCAGCAGATAAAGTAATAAGGTCAATAGCAAAAAGCATTGGT TCTATAAATAACAGCATGGATGATATTGATTCAACCATATCGATTAGAAATGGTAGCGCAACACTGTTCCCCCCAGAACA CCCCATGTATAAAGCACTTAAACTTGAAGTATCAAACCTTGAAAAATCAAAAATTCAGTTAGAAGGTAAAAAGAAAGAAG AGGAGATAAAACTAGAACAGGCCAAAGACAATATACAGTCACTAATTAATAATTGGGACAGTGAAATAATCATACGTTTG GCAGACGCATACCATTGGGATATAAACATTGCTAATAGTATGTTTATACTTATTTTTGGCGAAAAGATAAACTTCACTTT CCATTATGAGAATAGAAATGATTATCATTATGAAGAACACTATGGTTATCGTTTTGAACAAAAACCAATGTATAGTTTTG ATAAAAAATTGACTAATGGGTTTGGATCAATCTTATTATTGAAAAATCACATTTATATCGCTGAAAAATTAAAAATCCAT CCTGGAACCATAATTAAAATAAAAAACTATATTTTTGATGATAAGAGTAACGAGTTAGAGAATATCGCCAACAAGCTAAG AGTTAATCTTTAA
Upstream 100 bases:
>100_bases ATTCCGAGGAATTTACGCAGGCAAGTTATTTAGGTAAGCACATCGTTAACACCTGCTGTTTCACATCCCAAGCTAATGTC CTTAAATATAGAGGTAAATT
Downstream 100 bases:
>100_bases AAAAACGTTATTACATCCAAATTTAATAGGAATAATAATCATGCCTACTAGCACTGTATTAAATAAAATTAACGAATCGC GCCGCGACGCATTGGTTAAC
Product: insecticial toxin
Products: NA
Alternate protein names: A Component Of Insecticidal xin Complex; Insecticidal xin Complex Protein TcaA; Insecticial xin; Xin A; Insecticial xin Complex Protein
Number of amino acids: Translated: 830; Mature: 830
Protein sequence:
>830_residues MQDNIDHTASVIADTDNTIHQQAKAEERHRQAVRRATQLRNDPVLSGINKLAFSVAPKILQPEARTDLSLAEGIPERANE YADPASIQSLFSPGRYLCELYHVAKELHEDGNKLHIDKRRPDLQELVLSNSNMNQEVSSLEILLNVLQTKTPLDELTKDT EAHANDSSFTLPYDDNLTVINAILEDKAISLREIAVLLTEESDFSPTPALVQEQLGLNPASYALIDIKSPLDESYAKRLA HATQLSVEQLQWLNKNAIENSSNKNDPAKLEILAVISEYRRLHQRYGLSVDPFIAIINAVNTTHTNENKTSFFQQIFSTL DVDAGFNFLDQGSWEVIIRKALGITAEELLRIAKYCFGKSSISNVKMNSKKFSQLYRMAMIPRTLGVSFSQAEYLWQLYS HSDENIMEKIAQGNALTIIDAIIVLENTLQWMSEQKLDITTLQAMLTKQYSTTATPELFNFLSNIYQTLGKQVYSESLKP NLYRSLANGFHLKANVVAGLVNWLAKNDSEFTLERFWQNISMTFAEEPSLHQLEVHQPLLIQCQKLSQYVLIAQWAELSE QEIALILLPNGIDNRGSAPSPSITLLKLLSEFKLCQQEAKVSQSELFDIMQQLITNTNEKQEKLRNSADKVIRSIAKSIG SINNSMDDIDSTISIRNGSATLFPPEHPMYKALKLEVSNLEKSKIQLEGKKKEEEIKLEQAKDNIQSLINNWDSEIIIRL ADAYHWDINIANSMFILIFGEKINFTFHYENRNDYHYEEHYGYRFEQKPMYSFDKKLTNGFGSILLLKNHIYIAEKLKIH PGTIIKIKNYIFDDKSNELENIANKLRVNL
Sequences:
>Translated_830_residues MQDNIDHTASVIADTDNTIHQQAKAEERHRQAVRRATQLRNDPVLSGINKLAFSVAPKILQPEARTDLSLAEGIPERANE YADPASIQSLFSPGRYLCELYHVAKELHEDGNKLHIDKRRPDLQELVLSNSNMNQEVSSLEILLNVLQTKTPLDELTKDT EAHANDSSFTLPYDDNLTVINAILEDKAISLREIAVLLTEESDFSPTPALVQEQLGLNPASYALIDIKSPLDESYAKRLA HATQLSVEQLQWLNKNAIENSSNKNDPAKLEILAVISEYRRLHQRYGLSVDPFIAIINAVNTTHTNENKTSFFQQIFSTL DVDAGFNFLDQGSWEVIIRKALGITAEELLRIAKYCFGKSSISNVKMNSKKFSQLYRMAMIPRTLGVSFSQAEYLWQLYS HSDENIMEKIAQGNALTIIDAIIVLENTLQWMSEQKLDITTLQAMLTKQYSTTATPELFNFLSNIYQTLGKQVYSESLKP NLYRSLANGFHLKANVVAGLVNWLAKNDSEFTLERFWQNISMTFAEEPSLHQLEVHQPLLIQCQKLSQYVLIAQWAELSE QEIALILLPNGIDNRGSAPSPSITLLKLLSEFKLCQQEAKVSQSELFDIMQQLITNTNEKQEKLRNSADKVIRSIAKSIG SINNSMDDIDSTISIRNGSATLFPPEHPMYKALKLEVSNLEKSKIQLEGKKKEEEIKLEQAKDNIQSLINNWDSEIIIRL ADAYHWDINIANSMFILIFGEKINFTFHYENRNDYHYEEHYGYRFEQKPMYSFDKKLTNGFGSILLLKNHIYIAEKLKIH PGTIIKIKNYIFDDKSNELENIANKLRVNL >Mature_830_residues MQDNIDHTASVIADTDNTIHQQAKAEERHRQAVRRATQLRNDPVLSGINKLAFSVAPKILQPEARTDLSLAEGIPERANE YADPASIQSLFSPGRYLCELYHVAKELHEDGNKLHIDKRRPDLQELVLSNSNMNQEVSSLEILLNVLQTKTPLDELTKDT EAHANDSSFTLPYDDNLTVINAILEDKAISLREIAVLLTEESDFSPTPALVQEQLGLNPASYALIDIKSPLDESYAKRLA HATQLSVEQLQWLNKNAIENSSNKNDPAKLEILAVISEYRRLHQRYGLSVDPFIAIINAVNTTHTNENKTSFFQQIFSTL DVDAGFNFLDQGSWEVIIRKALGITAEELLRIAKYCFGKSSISNVKMNSKKFSQLYRMAMIPRTLGVSFSQAEYLWQLYS HSDENIMEKIAQGNALTIIDAIIVLENTLQWMSEQKLDITTLQAMLTKQYSTTATPELFNFLSNIYQTLGKQVYSESLKP NLYRSLANGFHLKANVVAGLVNWLAKNDSEFTLERFWQNISMTFAEEPSLHQLEVHQPLLIQCQKLSQYVLIAQWAELSE QEIALILLPNGIDNRGSAPSPSITLLKLLSEFKLCQQEAKVSQSELFDIMQQLITNTNEKQEKLRNSADKVIRSIAKSIG SINNSMDDIDSTISIRNGSATLFPPEHPMYKALKLEVSNLEKSKIQLEGKKKEEEIKLEQAKDNIQSLINNWDSEIIIRL ADAYHWDINIANSMFILIFGEKINFTFHYENRNDYHYEEHYGYRFEQKPMYSFDKKLTNGFGSILLLKNHIYIAEKLKIH PGTIIKIKNYIFDDKSNELENIANKLRVNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94533; Mature: 94533
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDNIDHTASVIADTDNTIHQQAKAEERHRQAVRRATQLRNDPVLSGINKLAFSVAPKIL CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH QPEARTDLSLAEGIPERANEYADPASIQSLFSPGRYLCELYHVAKELHEDGNKLHIDKRR CCCCCCCCHHHHCCCHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCC PDLQELVLSNSNMNQEVSSLEILLNVLQTKTPLDELTKDTEAHANDSSFTLPYDDNLTVI CCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHCCCCCCCEECCCCCCHHHH NAILEDKAISLREIAVLLTEESDFSPTPALVQEQLGLNPASYALIDIKSPLDESYAKRLA HHHHHHCCHHHHHHEEEEECCCCCCCCHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHH HATQLSVEQLQWLNKNAIENSSNKNDPAKLEILAVISEYRRLHQRYGLSVDPFIAIINAV HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NTTHTNENKTSFFQQIFSTLDVDAGFNFLDQGSWEVIIRKALGITAEELLRIAKYCFGKS HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC SISNVKMNSKKFSQLYRMAMIPRTLGVSFSQAEYLWQLYSHSDENIMEKIAQGNALTIID CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH AIIVLENTLQWMSEQKLDITTLQAMLTKQYSTTATPELFNFLSNIYQTLGKQVYSESLKP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH NLYRSLANGFHLKANVVAGLVNWLAKNDSEFTLERFWQNISMTFAEEPSLHQLEVHQPLL HHHHHHHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCEEECCCHHH IQCQKLSQYVLIAQWAELSEQEIALILLPNGIDNRGSAPSPSITLLKLLSEFKLCQQEAK HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VSQSELFDIMQQLITNTNEKQEKLRNSADKVIRSIAKSIGSINNSMDDIDSTISIRNGSA CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCE TLFPPEHPMYKALKLEVSNLEKSKIQLEGKKKEEEIKLEQAKDNIQSLINNWDSEIIIRL EECCCCCCHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEEE ADAYHWDINIANSMFILIFGEKINFTFHYENRNDYHYEEHYGYRFEQKPMYSFDKKLTNG CCCEEEEEEECCCEEEEEEECEEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHCC FGSILLLKNHIYIAEKLKIHPGTIIKIKNYIFDDKSNELENIANKLRVNL CCCEEEEECCEEEEEEEEECCCCEEEEECHHCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MQDNIDHTASVIADTDNTIHQQAKAEERHRQAVRRATQLRNDPVLSGINKLAFSVAPKIL CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH QPEARTDLSLAEGIPERANEYADPASIQSLFSPGRYLCELYHVAKELHEDGNKLHIDKRR CCCCCCCCHHHHCCCHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCC PDLQELVLSNSNMNQEVSSLEILLNVLQTKTPLDELTKDTEAHANDSSFTLPYDDNLTVI CCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHCCCCCCCEECCCCCCHHHH NAILEDKAISLREIAVLLTEESDFSPTPALVQEQLGLNPASYALIDIKSPLDESYAKRLA HHHHHHCCHHHHHHEEEEECCCCCCCCHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHH HATQLSVEQLQWLNKNAIENSSNKNDPAKLEILAVISEYRRLHQRYGLSVDPFIAIINAV HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NTTHTNENKTSFFQQIFSTLDVDAGFNFLDQGSWEVIIRKALGITAEELLRIAKYCFGKS HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC SISNVKMNSKKFSQLYRMAMIPRTLGVSFSQAEYLWQLYSHSDENIMEKIAQGNALTIID CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH AIIVLENTLQWMSEQKLDITTLQAMLTKQYSTTATPELFNFLSNIYQTLGKQVYSESLKP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH NLYRSLANGFHLKANVVAGLVNWLAKNDSEFTLERFWQNISMTFAEEPSLHQLEVHQPLL HHHHHHHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCEEECCCHHH IQCQKLSQYVLIAQWAELSEQEIALILLPNGIDNRGSAPSPSITLLKLLSEFKLCQQEAK HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VSQSELFDIMQQLITNTNEKQEKLRNSADKVIRSIAKSIGSINNSMDDIDSTISIRNGSA CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCE TLFPPEHPMYKALKLEVSNLEKSKIQLEGKKKEEEIKLEQAKDNIQSLINNWDSEIIIRL EECCCCCCHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEEE ADAYHWDINIANSMFILIFGEKINFTFHYENRNDYHYEEHYGYRFEQKPMYSFDKKLTNG CCCEEEEEEECCCEEEEEEECEEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHCC FGSILLLKNHIYIAEKLKIHPGTIIKIKNYIFDDKSNELENIANKLRVNL CCCEEEEECCEEEEEEEEECCCCEEEEECHHCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA