Click here to switch to the map view.

The map label for this gene is ygfI [C]

Identifier: 51597841

GI number: 51597841

Start: 4216920

End: 4217786

Strand: Direct

Name: ygfI [C]

Synonym: YPTB3550

Alternate gene names: 51597841

Gene position: 4216920-4217786 (Clockwise)

Preceding gene: 51597840

Following gene: 51597842

Centisome position: 88.88

GC content: 34.03

Gene sequence:

>867_bases
ATGTTTATATCAAAAAATTTACTCGTATTCTTTACTACGGTTCAAGAGGGATCGTTGACTAATGCAGCTGTGAAACTATT
CACAACACCGCCCCCCATGAGTAGAAGCTTAAAAATACTGGAAGAGGAACTGGGTTTTAAACTGTTCACACGTACAACAT
CGGGATTAAAACTGACATTGGAAGGCGCTGCTTTTTATCAAGAAATTTACCCAACCTACGTGCGATTAACTGAAATAACA
AAGAATTACAAAAAGAATAAAAATGGTATTATAAATATCGCCACCTATCAGTTGAATTCAGATCATGCTGGCGTGATATG
TGATTACTTTATAAAAAAAGGTAATTTTAACATTGAGTTAAGAGAGAATATTGGTGATATCAGTCAAATGGATATCGTCA
TCAGTACCAAAGAGATAAAAGGCTATGATTTCGATACTGAGCTAACCGCCAGTTGTGAAATAAAATTACTGTATGCATCA
CATTTGAATGACTTGCCTGATAGAGTTGAATATTTAAAGAAACTGCCCTTTATACAAAGTAGTATTTTTTGTTCTTCCTG
CTGCTTTAAGCGATTTTCACACAACCTAATACAACAAGGCTACTCAGGGAATGCACTGCGTATTGATGATGCCAGAGTTC
GCCATGAAATAATTAAAAAAGGGGCAGGAATCTCGCTATCAACAAATTATTTTTTTGATAAAAAAAAGATAAGTCACTCT
ACCGAAATAAGTTTTATATCAGATATCAACCTTGACATTACCTATTACATTTACTTTAAAAGCTCAGTAATTAACAAAGA
ATTTTTCATCCAATACATAACGAATAATTCACTCCTGCAGTGGCAGAAGGCAGAGAAAAAACACTAA

Upstream 100 bases:

>100_bases
TAACACTAATTATTCTAATATATGAAATAGACTTAACTTATATTATAGATATATTGTACATCTACATATCGCGACAACTA
ATAGTAAATAAGTGGTGCAT

Downstream 100 bases:

>100_bases
GTCAGATGCAACACGTAGTTAAATACAATTTGTTTAACTAAAATTTAGTTAAACAGAAGATAACAATAAAAACACCAGAC
AGAAACGATAGCGCGTCATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: LysR Family Transcriptional Regulator

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEIT
KNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYAS
HLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQQGYSGNALRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHS
TEISFISDINLDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH

Sequences:

>Translated_288_residues
MFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEIT
KNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYAS
HLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQQGYSGNALRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHS
TEISFISDINLDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
>Mature_288_residues
MFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEIT
KNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYAS
HLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQQGYSGNALRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHS
TEISFISDINLDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082184, Length=199, Percent_Identity=27.1356783919598, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33166; Mature: 33166

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTL
CEECCCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCEEEEE
EGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIEL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEE
RENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPFIQS
CCCCCCCCCEEEEEEEEECCCCCCCCCEECEEEEEEEEEHHCCCCHHHHHHHHHCCCHHH
SIFCSSCCFKRFSHNLIQQGYSGNALRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHS
HHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCEEECCEEEEHHHCCCC
TEISFISDINLDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
CCEEEEEECCCEEEEEEEEECCCCCHHHEEEEECCCCEEEEHHHHCCC
>Mature Secondary Structure
MFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTL
CEECCCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCEEEEE
EGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIEL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEE
RENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPFIQS
CCCCCCCCCEEEEEEEEECCCCCCCCCEECEEEEEEEEEHHCCCCHHHHHHHHHCCCHHH
SIFCSSCCFKRFSHNLIQQGYSGNALRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHS
HHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCEEECCEEEEHHHCCCC
TEISFISDINLDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
CCEEEEEECCCEEEEEEEEECCCCCHHHEEEEECCCCEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA