Click here to switch to the map view.

The map label for this gene is yddQ [C]

Identifier: 51597262

GI number: 51597262

Start: 3479299

End: 3480105

Strand: Reverse

Name: yddQ [C]

Synonym: YPTB2947

Alternate gene names: 51597262

Gene position: 3480105-3479299 (Counterclockwise)

Preceding gene: 51597263

Following gene: 51597261

Centisome position: 73.35

GC content: 48.7

Gene sequence:

>807_bases
ATGACTTATAACCCAAACCGGGCCTTGTTCCGGCTGTTCGTCTCACTGGTCTTATTATCTATTTTAATCGTTTATGGTTG
GCTAATTTATGGCGCTGAAGTTCCAATGGATTTAATGGCCCGCCGCCAACCACCTTCAACGACCTATTGGTTTGGTACTG
ATAGCTTGGGGCGCGATTTATGGCTGCGCTGTTTTCAGGGAATGACTACCAGCTTGCAAATTGGCCTGATTGCCGCGTTT
GCCAGTGGTCTGCTCGCCATGCTGACGGCCAGTTTATGTGCCGTTAATAAAACCCTCGATTATCTGATCCGTGGGTTGAT
TGACAGTATGTTGGCATTGCCTCATTTATTGCTGTTAGTCCTGATTTGCTTCACGTTAGGAGGCGGGAAACAAGGGGTTA
TCCTGGCGGTAGCATTGACCCACTGGCCAAAGCTGGCCTTGATTTTACGCGCCGAGATTTTACGTATTCGTGAGACAGAT
TATGTGATGCTGTCTCATCGGCTGGGCAACAGTAATTTCTACTGTTGGCGTCATCATCTGCTACCGTTATTACTACCACA
GTGGATTGTTGGCACACTGTTGATGTTTCCCCATGCGGTGTTGCACAGTGCCGCACTCAGCTTTTTGGGCTTCGGGCTTG
CGCCTCATGAACCGTCATTGGGGATATTACTGGCCGATGCTTTACGTTATCTGAGCAGTGGGTCATGGTGGCTGGCATTT
TTTCCTGGCTTGATTTTGGTGGGATTGGTGCTGATATTTGATCAGTTCGCGCGATCACTACAACAACTCTGGGTGAGGTT
AGCCTGA

Upstream 100 bases:

>100_bases
TGATGGGAATAGTGATGTTCTGCGCCATATTGGTCTTTTGCGGTAATAGCATTGCGAATGCCTTGTTACACCGTTTGAAC
CGGGGGGCTGCGCGGCAATT

Downstream 100 bases:

>100_bases
TGCTGAGATTTGACCAATTTGCTATTGATGTCGCTCATTATCGTTGGTTGGGCCGGAAAACCTGGCACCCGTTGTTGAGC
CATATTTCTCTGGATGTGAA

Product: ABC nickel/di-oligopepetide transporter, permease subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTYNPNRALFRLFVSLVLLSILIVYGWLIYGAEVPMDLMARRQPPSTTYWFGTDSLGRDLWLRCFQGMTTSLQIGLIAAF
ASGLLAMLTASLCAVNKTLDYLIRGLIDSMLALPHLLLLVLICFTLGGGKQGVILAVALTHWPKLALILRAEILRIRETD
YVMLSHRLGNSNFYCWRHHLLPLLLPQWIVGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGILLADALRYLSSGSWWLAF
FPGLILVGLVLIFDQFARSLQQLWVRLA

Sequences:

>Translated_268_residues
MTYNPNRALFRLFVSLVLLSILIVYGWLIYGAEVPMDLMARRQPPSTTYWFGTDSLGRDLWLRCFQGMTTSLQIGLIAAF
ASGLLAMLTASLCAVNKTLDYLIRGLIDSMLALPHLLLLVLICFTLGGGKQGVILAVALTHWPKLALILRAEILRIRETD
YVMLSHRLGNSNFYCWRHHLLPLLLPQWIVGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGILLADALRYLSSGSWWLAF
FPGLILVGLVLIFDQFARSLQQLWVRLA
>Mature_267_residues
TYNPNRALFRLFVSLVLLSILIVYGWLIYGAEVPMDLMARRQPPSTTYWFGTDSLGRDLWLRCFQGMTTSLQIGLIAAFA
SGLLAMLTASLCAVNKTLDYLIRGLIDSMLALPHLLLLVLICFTLGGGKQGVILAVALTHWPKLALILRAEILRIRETDY
VMLSHRLGNSNFYCWRHHLLPLLLPQWIVGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGILLADALRYLSSGSWWLAFF
PGLILVGLVLIFDQFARSLQQLWVRLA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=252, Percent_Identity=30.1587301587302, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787054, Length=253, Percent_Identity=30.0395256916996, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789889, Length=237, Percent_Identity=27.8481012658228, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=30.2222222222222, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789964, Length=232, Percent_Identity=30.1724137931034, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787498, Length=248, Percent_Identity=25.4032258064516, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30002; Mature: 29871

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYNPNRALFRLFVSLVLLSILIVYGWLIYGAEVPMDLMARRQPPSTTYWFGTDSLGRDL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCHHHHHH
WLRCFQGMTTSLQIGLIAAFASGLLAMLTASLCAVNKTLDYLIRGLIDSMLALPHLLLLV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LICFTLGGGKQGVILAVALTHWPKLALILRAEILRIRETDYVMLSHRLGNSNFYCWRHHL
HHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCEEHHHHHH
LPLLLPQWIVGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGILLADALRYLSSGSWWLAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
FPGLILVGLVLIFDQFARSLQQLWVRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TYNPNRALFRLFVSLVLLSILIVYGWLIYGAEVPMDLMARRQPPSTTYWFGTDSLGRDL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCHHHHHH
WLRCFQGMTTSLQIGLIAAFASGLLAMLTASLCAVNKTLDYLIRGLIDSMLALPHLLLLV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LICFTLGGGKQGVILAVALTHWPKLALILRAEILRIRETDYVMLSHRLGNSNFYCWRHHL
HHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCEEHHHHHH
LPLLLPQWIVGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGILLADALRYLSSGSWWLAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
FPGLILVGLVLIFDQFARSLQQLWVRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA