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The map label for this gene is oppD [H]

Identifier: 51597261

GI number: 51597261

Start: 3478493

End: 3479299

Strand: Reverse

Name: oppD [H]

Synonym: YPTB2946

Alternate gene names: 51597261

Gene position: 3479299-3478493 (Counterclockwise)

Preceding gene: 51597262

Following gene: 51597260

Centisome position: 73.33

GC content: 51.8

Gene sequence:

>807_bases
ATGCTGAGATTTGACCAATTTGCTATTGATGTCGCTCATTATCGTTGGTTGGGCCGGAAAACCTGGCACCCGTTGTTGAG
CCATATTTCTCTGGATGTGAATCCGGGGGAATTGGTGGCATTGGTCGGCGGGAGTGGAGAGGGTAAGAGCTTGTTACTCC
AAAGTGTCTTGGGTTTATTGCCGGAGAATATGCGGTGCCATGGCGAGATTATCCTCGATGGTGAGGTACTGTGCGCCCGC
GATAAAATTGAGCAGCGGGGTAAAACCTTATGTTATGTCCCCCAAGGCGTCAGTGCTCTGAACCCACTGATTAAAGTTGG
CTCACAAATCACCCGAGCAGCGCAACTCAGTGGTGTAAAACTGCGTTTGGACGATGTCGCCATGCAGTTGAAAACTTATA
ATCTTGCGCCGGGGCTGGTAAATGATTTCCCGCGTCAGCTCTCAGGCGGCATGGCGAAACGGGTACTGACCAGCTGCGCG
ACCTTGACCCATGCCCGCTATATTCTGGCCGATGAAGTGACCTCATGGCTAGATGAAGACCATGCTTGCCAGTTACTGAC
GCATCTGCGTGCTTTTTGTCAGCAGGGGCGCGGTATTCTGTGGGTAACCCATGATTTAGCGTTGGCCGCACGTTTTGCCG
ATAAAATTGCGGTGTTACATAAAGGTGAGTTGCACGAAACATTGAGCGCTGACGAACTGAAAAATAGCGGTGGTAGCCCA
TGGTTGCAGTCACTCTGGGCCGCATTACCGGAACAGCAATTTGTCAGCAAGCCAATCCCACTGGCTGAGGTGGCCGACTA
TGCTTAG

Upstream 100 bases:

>100_bases
GGTGGCTGGCATTTTTTCCTGGCTTGATTTTGGTGGGATTGGTGCTGATATTTGATCAGTTCGCGCGATCACTACAACAA
CTCTGGGTGAGGTTAGCCTG

Downstream 100 bases:

>100_bases
TGTCGAGAATCTGACCATCGTTCAAAGCGGAAAGCGGCTATGGGAGTCGGTATCCTTCACTTTGGCACCAGGGGAACGAT
TAGGTATCTCAGCACCCAGT

Product: ABC nickel/di-oligopepetide transporter, ATP binding subunit

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MLRFDQFAIDVAHYRWLGRKTWHPLLSHISLDVNPGELVALVGGSGEGKSLLLQSVLGLLPENMRCHGEIILDGEVLCAR
DKIEQRGKTLCYVPQGVSALNPLIKVGSQITRAAQLSGVKLRLDDVAMQLKTYNLAPGLVNDFPRQLSGGMAKRVLTSCA
TLTHARYILADEVTSWLDEDHACQLLTHLRAFCQQGRGILWVTHDLALAARFADKIAVLHKGELHETLSADELKNSGGSP
WLQSLWAALPEQQFVSKPIPLAEVADYA

Sequences:

>Translated_268_residues
MLRFDQFAIDVAHYRWLGRKTWHPLLSHISLDVNPGELVALVGGSGEGKSLLLQSVLGLLPENMRCHGEIILDGEVLCAR
DKIEQRGKTLCYVPQGVSALNPLIKVGSQITRAAQLSGVKLRLDDVAMQLKTYNLAPGLVNDFPRQLSGGMAKRVLTSCA
TLTHARYILADEVTSWLDEDHACQLLTHLRAFCQQGRGILWVTHDLALAARFADKIAVLHKGELHETLSADELKNSGGSP
WLQSLWAALPEQQFVSKPIPLAEVADYA
>Mature_268_residues
MLRFDQFAIDVAHYRWLGRKTWHPLLSHISLDVNPGELVALVGGSGEGKSLLLQSVLGLLPENMRCHGEIILDGEVLCAR
DKIEQRGKTLCYVPQGVSALNPLIKVGSQITRAAQLSGVKLRLDDVAMQLKTYNLAPGLVNDFPRQLSGGMAKRVLTSCA
TLTHARYILADEVTSWLDEDHACQLLTHLRAFCQQGRGILWVTHDLALAARFADKIAVLHKGELHETLSADELKNSGGSP
WLQSLWAALPEQQFVSKPIPLAEVADYA

Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG1123

COG function: function code R; ATPase components of various ABC-type transport systems, contain duplicated ATPase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592964, Length=231, Percent_Identity=29.004329004329, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI46592915, Length=231, Percent_Identity=29.004329004329, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI46592898, Length=231, Percent_Identity=29.004329004329, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI46592971, Length=231, Percent_Identity=29.004329004329, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI46592956, Length=231, Percent_Identity=29.004329004329, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI46592978, Length=231, Percent_Identity=29.004329004329, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1789890, Length=251, Percent_Identity=32.6693227091633, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788506, Length=282, Percent_Identity=30.8510638297872, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789963, Length=238, Percent_Identity=32.7731092436975, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787759, Length=253, Percent_Identity=31.2252964426877, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI145693107, Length=244, Percent_Identity=27.0491803278689, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787548, Length=246, Percent_Identity=26.8292682926829, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI48994883, Length=245, Percent_Identity=26.9387755102041, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787500, Length=231, Percent_Identity=26.8398268398268, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI48994997, Length=235, Percent_Identity=28.5106382978723, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789891, Length=259, Percent_Identity=28.1853281853282, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=31.2775330396476, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787758, Length=257, Percent_Identity=28.0155642023346, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789962, Length=256, Percent_Identity=26.5625, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=28.9256198347107, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=29.2576419213974, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789991, Length=255, Percent_Identity=25.4901960784314, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790467, Length=227, Percent_Identity=29.5154185022026, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=33.0316742081448, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787105, Length=247, Percent_Identity=29.9595141700405, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=29.3577981651376, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=28.125, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786563, Length=201, Percent_Identity=30.8457711442786, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787547, Length=219, Percent_Identity=23.7442922374429, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=28.8372093023256, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790534, Length=207, Percent_Identity=29.951690821256, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790162, Length=223, Percent_Identity=28.2511210762332, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788450, Length=202, Percent_Identity=29.7029702970297, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=31.6239316239316, Blast_Score=61, Evalue=1e-10,
Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=27.8846153846154, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI193211015, Length=220, Percent_Identity=30.9090909090909, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=220, Percent_Identity=30.9090909090909, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=220, Percent_Identity=30.9090909090909, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=226, Percent_Identity=27.8761061946903, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=220, Percent_Identity=28.6363636363636, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=230, Percent_Identity=27.8260869565217, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17539902, Length=246, Percent_Identity=26.4227642276423, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574533, Length=221, Percent_Identity=28.5067873303167, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 29472; Mature: 29472

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFDQFAIDVAHYRWLGRKTWHPLLSHISLDVNPGELVALVGGSGEGKSLLLQSVLGLL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
PENMRCHGEIILDGEVLCARDKIEQRGKTLCYVPQGVSALNPLIKVGSQITRAAQLSGVK
CCCCEECEEEEECCCEEEHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCE
LRLDDVAMQLKTYNLAPGLVNDFPRQLSGGMAKRVLTSCATLTHARYILADEVTSWLDED
EEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
HACQLLTHLRAFCQQGRGILWVTHDLALAARFADKIAVLHKGELHETLSADELKNSGGSP
HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHCCCCCH
WLQSLWAALPEQQFVSKPIPLAEVADYA
HHHHHHHHCCHHHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MLRFDQFAIDVAHYRWLGRKTWHPLLSHISLDVNPGELVALVGGSGEGKSLLLQSVLGLL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
PENMRCHGEIILDGEVLCARDKIEQRGKTLCYVPQGVSALNPLIKVGSQITRAAQLSGVK
CCCCEECEEEEECCCEEEHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCE
LRLDDVAMQLKTYNLAPGLVNDFPRQLSGGMAKRVLTSCATLTHARYILADEVTSWLDED
EEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
HACQLLTHLRAFCQQGRGILWVTHDLALAARFADKIAVLHKGELHETLSADELKNSGGSP
HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHCCCCCH
WLQSLWAALPEQQFVSKPIPLAEVADYA
HHHHHHHHCCHHHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]