| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
Click here to switch to the map view.
The map label for this gene is 51596193
Identifier: 51596193
GI number: 51596193
Start: 2203663
End: 2204478
Strand: Reverse
Name: 51596193
Synonym: YPTB1858
Alternate gene names: NA
Gene position: 2204478-2203663 (Counterclockwise)
Preceding gene: 51596196
Following gene: 51596192
Centisome position: 46.46
GC content: 49.39
Gene sequence:
>816_bases ATGACCGTAAAAGCAAAAAAATTCCGCATTGGCGTAGAGGGTGCCACCACTGATGGCCGCACCATCACCCGCGAATGGCT AACGCAAATGGCCGATAGCTACAACACCACGGTATACGGTGCCCGAATCAATATGGAGCACATCAAAGGCTATTCACCAG ACAGCACCTTTAAACGCTATGGTGATGTGACGGGCCTGAGTGCCGAAGAAATCAAGGACGGGCCGTTATCGGGGAAAATG GCACTGTATGCCGAAATCAGCCCTACAGCCGATTTGGTAGAAATGGTGAAGGATCGCCAAAAGGTTTACACCTCAATGGA AGTAAATATTAAATTTGCTGACACCAACAGTGCCTATCTTGTTGGCCTTGCGGTCACTGATGATCCCGCCAGTCTGGGTA CTGAAATGTTGAATTTCAGCGCCAGCGCCTCCGCTAATCCGCTGGCCTCCCGTAAGCAAGCCCCTGAGAACCTGTTTACC GCCGCAGAAGAAACGCTGATTGAATTCGAAACCGAGCAAGAACCTAAAACCAACCTGCTTACCACCATTAAAACCCTGTT TACCAAAAAGCAAACCGGTGATGACGCACGTTTTAACGATGTGCATCAGGCGGTTGAATTAGTCGCGCAGCAAGTTGAGG GGAAATTGTCGGCTATCAGCACCTTGGAGCGGTCCTTTACGGAGCTTAAAACTGCCAATGATGCGACCAAACAGGAACTT GATGAGCTGAAAATCACGCTCAGCAAAACAGATCGCGACTTCTCTCAACGCGAAAAATCAACCGGCAATGACAGCGCCAT TCTGACTGATTGCTAA
Upstream 100 bases:
>100_bases ACCTTGTGCCAGCCATAGCACAAGAGCGCCTGATTGTTCCGTTGGTCGCCGGTCGCCAACATAGGTCACTACTGTATCGA ATCAGACCGGAGCATCACGC
Downstream 100 bases:
>100_bases CTCATTTCGCTTGCTACGTTAAGGATTTAATTTCACATGAAAAAAACCACCCGATTAAAGTACAACCAGTACCGCCAGCA GGTTGCTAGCCTGAACGGTT
Product: V protein phage 186
Products: NA
Alternate protein names: Capsid Scaffolding; Capsid Scaffolding Protein; Phage Capsid Scaffolding; Capsid Scaffolding Protein O; Phage Capsid Scaffolding Protein GpO; Phage-Related Capsid Scaffolding Protein; Scaffold; V Protein Bacteriophage; Capsid Protein; Presumed Capsid Scaffolding Protein; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Presumed Capsid-Scaffolding Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRYGDVTGLSAEEIKDGPLSGKM ALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYLVGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFT AAEETLIEFETEQEPKTNLLTTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKLSAISTLERSFTELKTANDATKQEL DELKITLSKTDRDFSQREKSTGNDSAILTDC
Sequences:
>Translated_271_residues MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRYGDVTGLSAEEIKDGPLSGKM ALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYLVGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFT AAEETLIEFETEQEPKTNLLTTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKLSAISTLERSFTELKTANDATKQEL DELKITLSKTDRDFSQREKSTGNDSAILTDC >Mature_270_residues TVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRYGDVTGLSAEEIKDGPLSGKMA LYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYLVGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFTA AEETLIEFETEQEPKTNLLTTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKLSAISTLERSFTELKTANDATKQELD ELKITLSKTDRDFSQREKSTGNDSAILTDC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29869; Mature: 29737
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRY CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCHHHHHH GDVTGLSAEEIKDGPLSGKMALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYL CCCCCCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEE VGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFTAAEETLIEFETEQEPKTNLL EEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHH TTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKLSAISTLERSFTELKTANDATKQEL HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH DELKITLSKTDRDFSQREKSTGNDSAILTDC HHHEEEECCCCCCHHHHHHCCCCCCEEEECC >Mature Secondary Structure TVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRY CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCHHHHHH GDVTGLSAEEIKDGPLSGKMALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYL CCCCCCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEE VGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFTAAEETLIEFETEQEPKTNLL EEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHH TTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKLSAISTLERSFTELKTANDATKQEL HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH DELKITLSKTDRDFSQREKSTGNDSAILTDC HHHEEEECCCCCCHHHHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA