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The map label for this gene is ymfK [C]

Identifier: 51596125

GI number: 51596125

Start: 2139968

End: 2140654

Strand: Reverse

Name: ymfK [C]

Synonym: YPTB1790

Alternate gene names: 51596125

Gene position: 2140654-2139968 (Counterclockwise)

Preceding gene: 51596156

Following gene: 51596124

Centisome position: 45.12

GC content: 41.92

Gene sequence:

>687_bases
ATGGCAAGTACTTTAGCTGAAAGGGTCAGCGAAAGAAGGTCAGCGTTGAATCTTAGTCAGGAAGAATTGGCAAGGAAATC
AGGCGTGTCTAGAGTAGCTATAAGTAAAGCTGAGTTAGGGCTGACAAAAAACTTTAATGGCAATACGCTCTTTAATATTG
CCCGTGCTCTTTTATGCAATCCAGAATGGCTTCAGACGGGAAAGGGAAATCCTGAATTACAATCCACATCCAGCGCTAAT
TGGGATGCGAATGTAAAAGAAAATAAAGACTCGCACCCATTACAATCCTATGAGTATCCCAAAATCAGTTGGGTTAGCGC
GGGAAATTGGTCAGAAGCCATTGAGCCTTATAGTCTTGATGAAATAGACGAGTGGGTAACCACCACTAAGTATGCTGGAC
ATAATGCCTTTTGGCTTGATGTTAAAGGGGATTCAATGACCTCTCCTGTGGGCTTAACCATTCCTGAAGGTATGTCTATA
TTAGTCAACCCAGATGTTGAACCCACCTCAGGTAAATTAGTTATCGCCAAACTAACCGATGGTAATGAGGCGACATTCAA
ACGCTACATTGAAGATGCTGGCAATAAATATCTCAAGCCTCTGAACCCCCAGTACCCAATGATAGAAATCAATGGTAACT
GCCGAATTATCGGTGTTGTTGTTGAGGCTAAATGGGAAAATTTATAA

Upstream 100 bases:

>100_bases
CAAAGTATCAGATTCAGGCAAGAGCATAACGAAAACAAAGTTTCCAAAGATAGTGTTACTTTGGTGTCAATTTTTAGCTG
GATATAATTCAGAGGAATCA

Downstream 100 bases:

>100_bases
GGAAAAAACAATGTATTGTATGAAATGCAGCGCATCAATTGAGCCACATAGCAAATTTTGTTCATCTTGTGGAACTCAAG
TAAATCAGTTAAATCAGGCA

Product: prophage repressor protein

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MASTLAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCNPEWLQTGKGNPELQSTSSAN
WDANVKENKDSHPLQSYEYPKISWVSAGNWSEAIEPYSLDEIDEWVTTTKYAGHNAFWLDVKGDSMTSPVGLTIPEGMSI
LVNPDVEPTSGKLVIAKLTDGNEATFKRYIEDAGNKYLKPLNPQYPMIEINGNCRIIGVVVEAKWENL

Sequences:

>Translated_228_residues
MASTLAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCNPEWLQTGKGNPELQSTSSAN
WDANVKENKDSHPLQSYEYPKISWVSAGNWSEAIEPYSLDEIDEWVTTTKYAGHNAFWLDVKGDSMTSPVGLTIPEGMSI
LVNPDVEPTSGKLVIAKLTDGNEATFKRYIEDAGNKYLKPLNPQYPMIEINGNCRIIGVVVEAKWENL
>Mature_227_residues
ASTLAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCNPEWLQTGKGNPELQSTSSANW
DANVKENKDSHPLQSYEYPKISWVSAGNWSEAIEPYSLDEIDEWVTTTKYAGHNAFWLDVKGDSMTSPVGLTIPEGMSIL
VNPDVEPTSGKLVIAKLTDGNEATFKRYIEDAGNKYLKPLNPQYPMIEINGNCRIIGVVVEAKWENL

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=128, Percent_Identity=42.1875, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 25249; Mature: 25117

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTLAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCN
CCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEHHHCCEECCCCCCHHHHHHHHHHCC
PEWLQTGKGNPELQSTSSANWDANVKENKDSHPLQSYEYPKISWVSAGNWSEAIEPYSLD
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCHH
EIDEWVTTTKYAGHNAFWLDVKGDSMTSPVGLTIPEGMSILVNPDVEPTSGKLVIAKLTD
HHHHHHHHHEECCCCEEEEEECCCCCCCCCEEECCCCCEEEECCCCCCCCCCEEEEEECC
GNEATFKRYIEDAGNKYLKPLNPQYPMIEINGNCRIIGVVVEAKWENL
CCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCC
>Mature Secondary Structure 
ASTLAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCN
CHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEHHHCCEECCCCCCHHHHHHHHHHCC
PEWLQTGKGNPELQSTSSANWDANVKENKDSHPLQSYEYPKISWVSAGNWSEAIEPYSLD
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCHH
EIDEWVTTTKYAGHNAFWLDVKGDSMTSPVGLTIPEGMSILVNPDVEPTSGKLVIAKLTD
HHHHHHHHHEECCCCEEEEEECCCCCCCCCEEECCCCCEEEECCCCCCCCCCEEEEEECC
GNEATFKRYIEDAGNKYLKPLNPQYPMIEINGNCRIIGVVVEAKWENL
CCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]