Click here to switch to the map view.

The map label for this gene is cdd

Identifier: 51595864

GI number: 51595864

Start: 1836612

End: 1837496

Strand: Reverse

Name: cdd

Synonym: YPTB1527

Alternate gene names: 51595864

Gene position: 1837496-1836612 (Counterclockwise)

Preceding gene: 51595865

Following gene: 51595863

Centisome position: 38.73

GC content: 50.06

Gene sequence:

>885_bases
ATGCAAGCACGTTTTCACACCTCTTGGGCTGAGTTACCCGCCTCATTACAATTCGCACTAGAACCTATTCTGAGCGCAGA
AAACTTCCCTGCTATGCTGACCGCTGAGCAAGTGAAAACAGTAAAAAATATCAGTGGCCTGGATGATGATGCCTTGGCTT
TTGCCTTGTTACCGCTAGCAACCGCTTGTGCGCTTACGCCTATATCCCATTTTAATGTGGGTGCCATTGCCCGTGGAAAA
AGTGGTAATTTTTATTTCGGTGCCAATATGGAGTTCCGTGGTGTACCACTGCAACAGACGATCCACGCCGAGCAATGCGC
GGTAACCCATGCCTGGCTGCGTGGTGAAACCAATCTGGTTGCGATCACTGTCAATTACACGCCATGTGGCCATTGCCGCC
AATTTATGAATGAATTGAACTGTGGGTCTGAATTACATATTCATCTACCTGGCCGCCCGCCATCAACACTGGGCCAATAT
TTACCAGACTCTTTTGGACCAACAGATTTAGCGATCACAACACTTTTGATGGACCCCGTGAATCACGGTTACACGCTAGC
AGAAACCGATCCCCTTACGCAGGCAGCGTTAAATGCTGCAAATCATAGCCATGCGCCATACAGCCAATCCCACAGTGGTG
TGGCACTAGAAACCACCAATGGAAAAATTTATGCTGGCCGTTATGCTGAAAATGCCGCCTTTAACCCTAGCCTGCCCCCC
CTGCAAGCCGCGCTAATCTTGGCCAATATCACCGGTGAGAATTGTGCGTCGATCCGCCGCGCTGTACTGGTTGAAGGCCA
TAACGCAGTCACGAGCCAGTGGGATACAACCTTGGCGACATTGAACGCCTTGGGCTGTTCAGCGGTAAAACGCGTGACGT
TTTAA

Upstream 100 bases:

>100_bases
ATTTTAATTACATGAATTTCATAAATAACGAGATATAAATCACAATTACAGGTTTCCAATCTGCCTAGACTAGTCTCCTG
CGACTACTGGAGAGAACCTT

Downstream 100 bases:

>100_bases
TACCATAACAACTTATTGATGGTCGGGGTTAGGCGACTAGCCCCCCTCCCCACAATCAAGCATGGCGATATGAAAACACT
GGAAATCTCTTTCACAGCGA

Product: cytidine deaminase

Products: NA

Alternate protein names: Cytidine aminohydrolase; CDA [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQARFHTSWAELPASLQFALEPILSAENFPAMLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGK
SGNFYFGANMEFRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNCGSELHIHLPGRPPSTLGQY
LPDSFGPTDLAITTLLMDPVNHGYTLAETDPLTQAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPP
LQAALILANITGENCASIRRAVLVEGHNAVTSQWDTTLATLNALGCSAVKRVTF

Sequences:

>Translated_294_residues
MQARFHTSWAELPASLQFALEPILSAENFPAMLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGK
SGNFYFGANMEFRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNCGSELHIHLPGRPPSTLGQY
LPDSFGPTDLAITTLLMDPVNHGYTLAETDPLTQAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPP
LQAALILANITGENCASIRRAVLVEGHNAVTSQWDTTLATLNALGCSAVKRVTF
>Mature_294_residues
MQARFHTSWAELPASLQFALEPILSAENFPAMLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGK
SGNFYFGANMEFRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNCGSELHIHLPGRPPSTLGQY
LPDSFGPTDLAITTLLMDPVNHGYTLAETDPLTQAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPP
LQAALILANITGENCASIRRAVLVEGHNAVTSQWDTTLATLNALGCSAVKRVTF

Specific function: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis [H]

COG id: COG0295

COG function: function code F; Cytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788465, Length=292, Percent_Identity=64.7260273972603, Blast_Score=350, Evalue=6e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013171
- InterPro:   IPR006263
- InterPro:   IPR016193
- InterPro:   IPR020797 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF08211 dCMP_cyt_deam_2 [H]

EC number: =3.5.4.5 [H]

Molecular weight: Translated: 31493; Mature: 31493

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARFHTSWAELPASLQFALEPILSAENFPAMLTAEQVKTVKNISGLDDDALAFALLPLA
CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
TACALTPISHFNVGAIARGKSGNFYFGANMEFRGVPLQQTIHAEQCAVTHAWLRGETNLV
HHHHHCCCCCCCCCEEEECCCCCEEEECCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEE
AITVNYTPCGHCRQFMNELNCGSELHIHLPGRPPSTLGQYLPDSFGPTDLAITTLLMDPV
EEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCC
NHGYTLAETDPLTQAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPP
CCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCH
LQAALILANITGENCASIRRAVLVEGHNAVTSQWDTTLATLNALGCSAVKRVTF
HHEEEEEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQARFHTSWAELPASLQFALEPILSAENFPAMLTAEQVKTVKNISGLDDDALAFALLPLA
CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
TACALTPISHFNVGAIARGKSGNFYFGANMEFRGVPLQQTIHAEQCAVTHAWLRGETNLV
HHHHHCCCCCCCCCEEEECCCCCEEEECCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEE
AITVNYTPCGHCRQFMNELNCGSELHIHLPGRPPSTLGQYLPDSFGPTDLAITTLLMDPV
EEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCC
NHGYTLAETDPLTQAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPP
CCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCH
LQAALILANITGENCASIRRAVLVEGHNAVTSQWDTTLATLNALGCSAVKRVTF
HHEEEEEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA